Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00719 ATGGATAATGAAATTGACGTTCCTCCATTTTTTCTGTGCCCCATATCCTTAGAGATCATGAAAGATCCGGTTACAGTTTCTACCGGCATCACCTATGATCGTCAGAGCATTGAAAAATGGCTGTTCACTGACAACAATACAACGTGCCCAGTTACCAAACAACCGCTATCTGACTGTGCTGATCTGACCCCAAACCACACTCTCAGGCGATTGATACAATCATGGTGTACAGCGAATGTTTCTCATGGCATCGAGAGGATACCTACTCCAAGGCCTCCGATCTCGAAGATCCAAATCAGAAAACTCATCAAAGATGCTACTAAATCACCAGAACTGCAAACTGAATGTCTCAGAAGTCTCAGAACCATCGCATCTGAGAGTGAGACAAATAAACGTAACATCGAAGTCGCAGGTGGAGTTGAGTTCTTAGCGTCAGTTGTGATTAGCAATACAGTCTCCTCAACATTGCTGACGGGAAGTCCTTATTCAGACGATGAGTTTGACTTTCTAGCTAGTGTAAGCGACGATGCGTTGAATGTCCTCTACAATCTTCGTGTATCAGAATCTGGGTTAAGAAATCTGCTTGTATTGAAAAATGGTGAATTTCTGTACTCCTTAACAAGACTCTTGCAGCGTGGATGCTTTGCGTCTCGTGCTTATGCCGTTCTCTTGATGAGATCCATGTTTGAAGTGGCTGATCCAATGCATTTAGCTAATCTCAAACCTGAACTCTTTTTTGAACTTGTACAAGTGCTGAATGATCAGATATCCCAGCAGGCATCAAAAACAACCCTAAAAATATTAATCCAAACATGTCCTTGGGGAAGAAATAGAATCAAAGCAGTGGAAGCAGGTGCTGTGTCGGTCTTAATCGATCTTCTCCTTGACTCTAAGGAAAGAAGGCCCACTGAGATGATCTTAGTGTTGCTGGATATGCTGTGTGCATGTGCCGAGGGACGGGCAGAATTGTTGAGCCATGGGGCAGGACTAGCTGTTGTTTCCAAAAGGATTCTAAGGGTGTCAACCCTGGCCACAGAGAAGGCTGTAAGGATTTTGTTTTCCATTTCAAACTTCTCAGCAACTCCTAGTGTTCTTCAAGAAATGCTTCATCTGGGTGTTGTGGCAAAACTTGGTCTGGTGCTTGAAGTGGACAGTGGGAAAAAGGTCAAGGACAAAGTCACGAACATACTTAAAATGCATGTTCGAGCGTGGAGAGATTCTTCATGCATCCCAAGAAGTTTGTTTGCTTCATACCCATTTTGA 1263 0.4347 MDNEIDVPPFFLCPISLEIMKDPVTVSTGITYDRQSIEKWLFTDNNTTCPVTKQPLSDCADLTPNHTLRRLIQSWCTANVSHGIERIPTPRPPISKIQIRKLIKDATKSPELQTECLRSLRTIASESETNKRNIEVAGGVEFLASVVISNTVSSTLLTGSPYSDDEFDFLASVSDDALNVLYNLRVSESGLRNLLVLKNGEFLYSLTRLLQRGCFASRAYAVLLMRSMFEVADPMHLANLKPELFFELVQVLNDQISQQASKTTLKILIQTCPWGRNRIKAVEAGAVSVLIDLLLDSKERRPTEMILVLLDMLCACAEGRAELLSHGAGLAVVSKRILRVSTLATEKAVRILFSISNFSATPSVLQEMLHLGVVAKLGLVLEVDSGKKVKDKVTNILKMHVRAWRDSSCIPRSLFASYPF* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00719 420 Gene3D - 238 414 IPR011989 -
Pte13g00719 420 Gene3D - 98 235 IPR011989 -
Pte13g00719 420 PANTHER WDSAM1 PROTEIN 4 411 IPR045185 GO:0061630
Pte13g00719 420 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Pte13g00719 420 CDD RING-Ubox_PUB 8 58 IPR045210 -
Pte13g00719 420 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Pte13g00719 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Pte13g00719 420 SUPERFAMILY ARM repeat 101 387 IPR016024 -
Pte13g00719 420 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Pte13g00719 420 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Pte13g00719 420 SUPERFAMILY RING/U-box 4 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00719 Pte-Chr13 5840658 5842172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00719 1 419 U-box Gene Family AT3G52450 56.422 1.91e-173 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00719 - - gmx:100809123 545.043