Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00690 ATGTCGATGAACCAACATTACTCTTCAGACAGTCCTCCTTGGTGGACTACTCAACAAGAGCACCCATACCAACCCATGCTAATGCAAGCAACTCATCACAACCCCACCCCTTTTCCATCGAATTATTCATGGCGATCTCAACTTTATCACCCTAGCCAAAATTGCTTCGATTCCTCCAATTCCCATGACCCACACACTACTTCCAGCTCGCACCACCGCTACCAGACCACCTCTCCTCCGTTCAACCTAAACATAGAGGAAGAGGAGGAAGAAGAAGAAGACACCGATGACATCACTCAACAACCCAGCACGCGACATGACGAATATGATCCAGAGGGAAGAGGAGCTGTTCAAGAAAGAGACCCCATGTTTGAGAAGCCATTGACGCCAAGCGATGTGGGCAAGCTCAATCGCCTAGTCATTCCGAAACAACATGCCGAGAAGTACTTCCCACTCAGCGGTGAGTCGGCGCAACAGAAGGGTCTGTTGCTGAGTTTTGAAGATGAGTTGGGAAAGTGTTGGAAGTTTCGGTATTCCTACTGGAACAGCAGCCAAAGCTATGTACTAACAAAGGGTTGGAGCCGCTACGTTAAAGAGAAGCGGCTCGATGCAGGCGACATTGTTTTGTTCGAAAGGGACGCAAACGATGAGCATCGGCTGTTCATCGGTTGGAGGAGGCGCCGACAGCAAAGGGATCAGTCGGCAGCTGCACATGTTAGCCGGGCGGCGGCTGCGGCGGGTCGCAGTAATAGCTGGAATAACAGTATCAATTTGAACGTTGGCAATGGTGGTGTGGATATGGGGTGGACCAGAGTGATCTATTCTGCGCACCCTTATCCTACGCATCAACCTCCTCCACTGCCATACCAACCCGAATGTCTTCATGCAGGTAAAGAAGTATCGAGCCAAACGACGACGTCGATGGGGAGCAGCTCAAAGGTGCTGAGGCTGTTTGGCGTGAACATGGCATACCAGTCCGAAGGGTCTGAGCCATCCACACCTAGTGGCTCATCTATGTCCGGCCATGCTTTAAACCAGTATTATCATCACCACCAAACCTCATATCATTCGCAGAGTCCTCATGATCACATGGATATCACTGTCCCCCGAGATGTCAACCATATGAGAAATCACCGAGGATGA 1143 0.5048 MSMNQHYSSDSPPWWTTQQEHPYQPMLMQATHHNPTPFPSNYSWRSQLYHPSQNCFDSSNSHDPHTTSSSHHRYQTTSPPFNLNIEEEEEEEEDTDDITQQPSTRHDEYDPEGRGAVQERDPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGESAQQKGLLLSFEDELGKCWKFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDIVLFERDANDEHRLFIGWRRRRQQRDQSAAAHVSRAAAAAGRSNSWNNSINLNVGNGGVDMGWTRVIYSAHPYPTHQPPPLPYQPECLHAGKEVSSQTTTSMGSSSKVLRLFGVNMAYQSEGSEPSTPSGSSMSGHALNQYYHHHQTSYHSQSPHDHMDITVPRDVNHMRNHRG* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00690 380 SUPERFAMILY DNA-binding pseudobarrel domain 120 229 IPR015300 -
Pte13g00690 380 MobiDBLite consensus disorder prediction 98 121 - -
Pte13g00690 380 Pfam B3 DNA binding domain 124 227 IPR003340 GO:0003677
Pte13g00690 380 CDD B3_DNA 122 218 IPR003340 GO:0003677
Pte13g00690 380 SMART B3_2 124 228 IPR003340 GO:0003677
Pte13g00690 380 ProSiteProfiles B3 DNA-binding domain profile. 124 228 IPR003340 GO:0003677
Pte13g00690 380 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 45 334 IPR044800 GO:0003700
Pte13g00690 380 MobiDBLite consensus disorder prediction 55 83 - -
Pte13g00690 380 MobiDBLite consensus disorder prediction 55 131 - -
Pte13g00690 380 Gene3D - 115 239 IPR015300 -
Pte13g00690 380 FunFam B3 domain-containing protein 117 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00690 Pte-Chr13 5574503 5577804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00690 116 227 RAV Transcription Factor Family AT3G11580 72.951 3.15e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte13g00690 B3 1.9e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00690 K09287 - vvi:100245964 289.656