Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00684 ATGGAGAAGATGCCACCAGGGTTTCGTTTCTACCCGACTGAAGAAGAGCTGCTCTTGTGCTATCTCCACAACAAGCTCCAATTAGAGGAACTGAAGGATTTCAAAAACGTGATGGACCTGGTTATACCAGTTGTTGCTATATATGACTACAGCCCATGGGATCTCCCACAGCAATCCGGACCGATGTGCGTTTCAGACAGAGAGTGGTTCTTCTTCGTCAAGAGACAAGAGCGCGAAGAACTTAGAGGCAGACCAAAACGACTCACCCGTTTTGGGTATTGGAAGGCTACTAGTTCTCCTATTCATGTTTATTTCTCCAAAAATGGTGTCATTGGGATGAAGAGGACTATGGTGTTCTACACTGGAAGAGCTCCCACCGGAAAGAGGACTGAGTGGAAGATGAACGAATATAAAGCCATCAACCAAGGAGAGGCCTCTTCTTCAAGCAGCCAAATTCCCATTGTATGTTTTAGACATGCGTATCTCTATTTGCCTTTATTGTATAAGAAATCGAAATGTTTGCGAGCATTTGATAGGCGTCCAACAGCTACAGCCATATGTAATCCTATTCATCCCACAGACGCTGTCGAACAAGCTCCGAGAGGAGAGAGTTCGACCTCAGCAGCCCTAGCAGTTGAGAAAATGGTTTTTAGCTCATCGCCTGAGAGTACGTCGTCAGGTGGTGATGATGGTCGCCTGCAAGCTCGGCCCTCTCACATTGTTGCAGGAGAAGGCAAAAACTCAATGGACCCTGTCAGCGAAGAGTTGATATGGGATGAGTGGGATCAGAAATTGGATTCGTTCATTAATTGA 813 0.4613 MEKMPPGFRFYPTEEELLLCYLHNKLQLEELKDFKNVMDLVIPVVAIYDYSPWDLPQQSGPMCVSDREWFFFVKRQEREELRGRPKRLTRFGYWKATSSPIHVYFSKNGVIGMKRTMVFYTGRAPTGKRTEWKMNEYKAINQGEASSSSSQIPIVCFRHAYLYLPLLYKKSKCLRAFDRRPTATAICNPIHPTDAVEQAPRGESSTSAALAVEKMVFSSSPESTSSGGDDGRLQARPSHIVAGEGKNSMDPVSEELIWDEWDQKLDSFIN* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00684 270 Gene3D NAC domain 13 172 IPR036093 GO:0003677|GO:0006355
Pte13g00684 270 SUPERFAMILY NAC domain 3 144 IPR036093 GO:0003677|GO:0006355
Pte13g00684 270 MobiDBLite consensus disorder prediction 219 248 - -
Pte13g00684 270 Pfam No apical meristem (NAM) protein 5 138 IPR003441 GO:0003677|GO:0006355
Pte13g00684 270 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Pte13g00684 270 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00684 Pte-Chr13 5520212 5521720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00684 2 263 NAC Transcription Factor Family AT3G44350 40.602 1.63e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte13g00684 NAM 5.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00684 - - jre:109016036 245.358