Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00660 ATGAAGGTGGTAGCAGCTTATTTGTTGGCTGTGTTAGGAGGGAACAACAGCCCTTCTGCTGGTGATCTCAAGGAAATTCTTGGTTGCGTTGGTGCAGATGCTGATGAAGACAGAATAGAGTTTTTGTTATCGGAAGTCAAGGGTAAGGATATAACAGAACTAATTGCTGCTGGTCGAGAGAAATTGGCATCAGTACCTTCCGGTGGCGGTGGTGCTATTGCAGTGTCTGCCAGTGTAGGGGGTGCTGGAGGTGCTGCCCCAGCTGCAGCTGCTGCTGAGGCAAAGAAAGAAGAGAAGGTGGAGGAGAAAGAAGAGTCTGATGACGACATGGGCTTTAGCCTCTTTGATTAA 351 0.4872 MKVVAAYLLAVLGGNNSPSAGDLKEILGCVGADADEDRIEFLLSEVKGKDITELIAAGREKLASVPSGGGGAIAVSASVGGAGGAAPAAAAAEAKKEEKVEEKEESDDDMGFSLFD* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00660 116 FunFam 60S acidic ribosomal protein P2 1 59 - -
Pte13g00660 116 Coils Coil 89 109 - -
Pte13g00660 116 Gene3D - 1 59 IPR038716 -
Pte13g00660 116 MobiDBLite consensus disorder prediction 88 116 - -
Pte13g00660 116 Pfam 60s Acidic ribosomal protein 17 115 - -
Pte13g00660 116 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 116 IPR044076 GO:0002182|GO:0003735|GO:0022625
Pte13g00660 116 CDD Ribosomal_P2 1 116 IPR044076 GO:0002182|GO:0003735|GO:0022625
Pte13g00660 116 Hamap 50S ribosomal protein L12 [rpl12]. 2 116 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00660 Pte-Chr13 5204235 5206061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00660 1 117 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 64.957 4.22e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00660 K02943 - egr:104452151 128.257