Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00654 ATGTACTCCGGCACTAAGTGCTCTCCTAGTTCTAGTTCTACTTGTACTACTAGAGCTGCAGGGCGTCAGCCAGCTTACCGGGGAGTACGTCGTCGGAGCAGTGGAAAATGGGTATCTGAAATTCGAGAACCAAAAAAGCCAAACCGAATTTGGTTAGGGACATTTTCGACGCCAGAAATGGCTGCAGTTGCTTATGATGTGGCGGCCCTTGCTCTCAAGGGTAGGGATGCTGAATTGAACTTCCCGAACTCAGCTTCCTCTTTGCCAGTGCCTGCTTCTTCTTCTCCACATGATATACAGTTGGCCGCTGCCAGTGCTGCTGCTGCAGTTGGGGCTGCAAAAGATGCTCTATCAGGCATTGCTGGTAGCCAAGCGGGCAGCGTCAACATTGTTGGCTCAGTAGCACAGGAGAGGGCTACAGTGGTTAATGAGTTTGTAGACGAGGATTTGATTTTTGATATGCCCAATGTGATCATGAATATGGCAGAAGGGATGCTTCTCAGCCCTCCTCATTTCGAAATTTCTGGAGATGCTGGTTCCCTCGACGACGATGATCCAGGCCTTTGGAAATTTACCTAA 579 0.494 MYSGTKCSPSSSSTCTTRAAGRQPAYRGVRRRSSGKWVSEIREPKKPNRIWLGTFSTPEMAAVAYDVAALALKGRDAELNFPNSASSLPVPASSSPHDIQLAAASAAAAVGAAKDALSGIAGSQAGSVNIVGSVAQERATVVNEFVDEDLIFDMPNVIMNMAEGMLLSPPHFEISGDAGSLDDDDPGLWKFT* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00654 192 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Pte13g00654 192 Gene3D AP2/ERF domain 25 83 IPR036955 GO:0003700|GO:0006355
Pte13g00654 192 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Pte13g00654 192 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700|GO:0006355
Pte13g00654 192 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Pte13g00654 192 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 21 190 IPR045277 GO:0003700
Pte13g00654 192 MobiDBLite consensus disorder prediction 1 20 - -
Pte13g00654 192 MobiDBLite consensus disorder prediction 1 33 - -
Pte13g00654 192 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Pte13g00654 192 Pfam AP2 domain 24 74 IPR001471 GO:0003700|GO:0006355
Pte13g00654 192 SUPERFAMILY DNA-binding domain 25 84 IPR016177 GO:0003677
Pte13g00654 192 FunFam Ethylene-responsive transcription factor 2 24 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00654 Pte-Chr13 5145289 5146487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00654 21 191 AP2-EREBP Transcription Factor Family AT2G36450 64.000 5.49e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte13g00654 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00654 - - pvy:116139160 229.95