Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00651 ATGGACAGCTCTCGTCGATCTTTCGATAGATCAAGAGAACCTGGATTGATAAAGAAACCTCGATTGAATGATGACGTTAATGGCCGACCTTTTCCGCAGCGGCCTTTACCGTCCGCGGCGAATGCTAGGTTGAGAGCAATTCAAAGAGATTCCGAAGGTATTGATGCTGGACGTGGCGGCAGAGCAGGGGGAGAAGGATATCACCCTCAGCCACCGCAGCATCAAGAGCTTATTGTACAGTATAGAAATGCTCTAGCTGAGCTGACATTTAATTCAAAACCTATCATTACCAACTTGACAATAATCGCTGGCGAGAATCAATATGCTGCGAAAGATATCGCTGCTATGGTTTGCACTAATATATTAGAGGTTCCCAGCGACCAAAAGTTGCCATCTCTCTATCTTCTAGACAGTATTGTAAAGAATATTGGGAGTGATTATATAAAATATTTTGCTGCAAGATTGCCAGAGGTATACTGCAAGGCATTCAAGCTAGTAGATCCTTCTGTTCATGCTAGTTTGAGGCATTTGTTTGGAACATGGAAGGGTGTCTTTCCTCCTCAGCCACTGCAGATGATTGAGAAAGAACTTGGTTTCAATCAAACTGTTAATGGTTCAGCTTCAGGAGTTACCACAATGAGGACTAATCCTCAGACACAACGCCCTCCTCACAGTATCCATGTGAATCCTAAATATTTAGAAAGACAACGACTTCAACAGGCTAGCAAAGTAAAGGGAGCTGCTAACGATGTGGCAGAGCTTAGTGGAAGGACATCTGAGGACGCCGAGAGGCTTGCTAGAACAGTGAGTATGAATGCTGGACGATCAATGATAGATCCAAATGTTAAGAATCATAATATTCAACCTTCTCACGAAAATGTGATTACTGAATCTATTCATGAGAAGGGTTCCACTTTTCCTTATGGTGGCAATGAATATGTTTCTGGGACTTCGGCTTCAGGAATTGGAAGAAGTACCGTTAGAAGTACTGAGATTGGACGTGACAAACTTTGGTATAAAGCAGGAAGTGGCAATGCAGACACATCTAGTCAAAGAAATGGCCTCAAGATCAAGCATGGGTTTCCAAATTTAGAAGCACATAAACCTTCAAATGTCACTTCTCGTATTAATGCTACTCAAAACTTCTCAAAATTAAATACAAGTGGTCTATCAAATAGCTGGAAAAACTCTGAAGAAGAAGAGTTCTTGTGGGATAACATGAATTCTGGACTGAGTGATCATGGCGTCTCTGCTATTTCCAATACATTACCTAAAGATCATTGGACTCCAGACGATGAGGATGATGATGAAAATTTGGAAATTGTAAACCTTCAGAAAGGGAACACCAAAACTGATGTAGGATCCAGAGTTGCTAGAGGAAAATCCACTGATCAGCAACAACTAATGACTCTCACGCGTTATGCGGAGTCGCCTTGGACATCACAGGATACTCACCTAGGTCACACAGGAACGTATTCATCAACTCTTAGTGGTAAGATTGGAAGTAAATCCCATATAAATTCTTCACACTCTGGAGGTTCACGAGTTGGGTCACTATCAAATTCATACACTGTGTCTTCCGGGGTCGTGGGGCCACGCCAGTCTGGTGGATCTGCATTGCCATCTGAGCAATCTCCTGTGCATCAGCATCCTCAATCACCTACATTGACAGGACGTGCTTTCCAGCCTCAGTTACGAAATTCGAATGGGAAAGAGCGTCTTTCATTTTCCAAAACATCTCAATTGTCTGCAGGGCTAGAAAATAAAAATACACAGGACAGGTCATTGACTTCACCTTCTAATCTGTCGGTGGGTAGTTGGCAAAAATCAAATTTCAAAGACTTGAAAATTCCAATGCTTTCGAAAGCTCCAGTACAAAAAAGACAGCATGATTCATCTTCACAGCAACTAGTAGAGTCCAAACAGATAGAGTTTTCTGATATGAAGGAGAAGGCCTCCATGTCTCAAGTTTCAGATCATGAAAATCAGCCAACACCAGAGAAATCGGCATCAGAAATTTCAAGTTCCTTACATAATGAAACTTCAGAGCCTTCAACTGCCAGTAGTCTGTTAGCTGCAGTCATGAAGAGTGGAATTTTGTCCAAAACTTCGATTACTAGTAGTCCACCTATGAGTCTTCTAGATATAGGGAAGCTGCCATCACAATCAGGACGTTGCACTCAGCCTTTAAGTAGGTCTCCTTCCCAAGATACTTCAGTTCCTATGGTTTCCTTACCATCTCCATTACCGTCTTCCAATAATGCCAACACTGTTTTCCCAAAAAAATGTCAAAAGAAGGAAGACCATTTATCAGTAGCACCCGCTCCACCTCCTCCTTCTGCCGTAAGTAGTAGCTTTGTTCAAACCTCGAATGTTCTGAACAATTCATCTAATCCAATTTCAAACATTTTGAGCTCATTAGTTGCCAAGGGTTTAATATCTGCACAGGCAGAATCAAAAAATGTTGCACAATCTGATATGCTTTCTCGACTACAAGATCATAATGAAGGTGTCTGTTCTAGTACCCCTCAGCCAGTTCCTCAAGTTCCTACTCCTGCGGCTATCCCTTCATCAATGTCCAAGGACATGTTATCCTCTCAGGAACAGGATTCAAAAAGCTCTGCTTTCTGCTCTCAATCTAGCCCGACAAAAATAAAAAGCCTCATTGGTTTTGAGTTTAAATCAGATGTTCTACGAGAAGTCCATTCTCCTGTCCTCAGAGAGCTATATGACGATTTTTTTAGTTGCAGCATTTGCGGCCTTAGACTGAAATTTCGGGACCAACTGGACAGACACTTGGAGTGGCATGCTTTGAGTGTGCCTGAAGAAAACGGCGAGGTTAAGAAATCAAGAAGCTGGTATGCAAACTCTAGTGATTGGGTTTCTGGGAAATCTCAGTTTCCTTTAGAGTCTGAGTTTCCTTTTCTCGATCAATTGGGCCAGCTGGTGGATAAAGTGGAGCCAATGGTTCTGGCAGATGAAAATCAGTGCATCTGTCCATTGTGTGGTGAACTATTTGAAGATTTCTACTGTCAAGAAAGGGAGGAATGGATGTTCAAGGGAGCTATTTACATGGCTATGAAGTCTGGTTTGCACGAGGACTCCACTGGTCCAATTGTACATGGGAAGTGTGTATCTGAAAGTTCCACCAATGACTTGGGAATGTTCAACGGAATCAAAATGGAGGAGGACATACAAATAGGGTGA 3207 0.4228 MDSSRRSFDRSREPGLIKKPRLNDDVNGRPFPQRPLPSAANARLRAIQRDSEGIDAGRGGRAGGEGYHPQPPQHQELIVQYRNALAELTFNSKPIITNLTIIAGENQYAAKDIAAMVCTNILEVPSDQKLPSLYLLDSIVKNIGSDYIKYFAARLPEVYCKAFKLVDPSVHASLRHLFGTWKGVFPPQPLQMIEKELGFNQTVNGSASGVTTMRTNPQTQRPPHSIHVNPKYLERQRLQQASKVKGAANDVAELSGRTSEDAERLARTVSMNAGRSMIDPNVKNHNIQPSHENVITESIHEKGSTFPYGGNEYVSGTSASGIGRSTVRSTEIGRDKLWYKAGSGNADTSSQRNGLKIKHGFPNLEAHKPSNVTSRINATQNFSKLNTSGLSNSWKNSEEEEFLWDNMNSGLSDHGVSAISNTLPKDHWTPDDEDDDENLEIVNLQKGNTKTDVGSRVARGKSTDQQQLMTLTRYAESPWTSQDTHLGHTGTYSSTLSGKIGSKSHINSSHSGGSRVGSLSNSYTVSSGVVGPRQSGGSALPSEQSPVHQHPQSPTLTGRAFQPQLRNSNGKERLSFSKTSQLSAGLENKNTQDRSLTSPSNLSVGSWQKSNFKDLKIPMLSKAPVQKRQHDSSSQQLVESKQIEFSDMKEKASMSQVSDHENQPTPEKSASEISSSLHNETSEPSTASSLLAAVMKSGILSKTSITSSPPMSLLDIGKLPSQSGRCTQPLSRSPSQDTSVPMVSLPSPLPSSNNANTVFPKKCQKKEDHLSVAPAPPPPSAVSSSFVQTSNVLNNSSNPISNILSSLVAKGLISAQAESKNVAQSDMLSRLQDHNEGVCSSTPQPVPQVPTPAAIPSSMSKDMLSSQEQDSKSSAFCSQSSPTKIKSLIGFEFKSDVLREVHSPVLRELYDDFFSCSICGLRLKFRDQLDRHLEWHALSVPEENGEVKKSRSWYANSSDWVSGKSQFPLESEFPFLDQLGQLVDKVEPMVLADENQCICPLCGELFEDFYCQEREEWMFKGAIYMAMKSGLHEDSTGPIVHGKCVSESSTNDLGMFNGIKMEEDIQIG* 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00651 1068 SMART 558neu5 76 198 IPR006569 -
Pte13g00651 1068 FunFam polyadenylation and cleavage factor homolog 4 70 198 - -
Pte13g00651 1068 MobiDBLite consensus disorder prediction 657 684 - -
Pte13g00651 1068 MobiDBLite consensus disorder prediction 833 878 - -
Pte13g00651 1068 MobiDBLite consensus disorder prediction 495 605 - -
Pte13g00651 1068 SUPERFAMILY ENTH/VHS domain 73 195 IPR008942 -
Pte13g00651 1068 Gene3D - 69 198 IPR008942 -
Pte13g00651 1068 MobiDBLite consensus disorder prediction 646 684 - -
Pte13g00651 1068 MobiDBLite consensus disorder prediction 704 785 - -
Pte13g00651 1068 MobiDBLite consensus disorder prediction 1 70 - -
Pte13g00651 1068 ProSitePatterns Zinc finger C2H2 type domain signature. 916 936 IPR013087 -
Pte13g00651 1068 MobiDBLite consensus disorder prediction 415 435 - -
Pte13g00651 1068 ProSiteProfiles CID domain profile. 73 201 IPR006569 -
Pte13g00651 1068 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 76 1054 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pte13g00651 1068 MobiDBLite consensus disorder prediction 853 878 - -
Pte13g00651 1068 ProSiteProfiles Zinc finger C2H2 type domain profile. 914 941 IPR013087 -
Pte13g00651 1068 MobiDBLite consensus disorder prediction 1 25 - -
Pte13g00651 1068 CDD CID_Pcf11 80 197 IPR047415 -
Pte13g00651 1068 Pfam CID domain 83 191 IPR006569 -
Pte13g00651 1068 MobiDBLite consensus disorder prediction 446 465 - -
Pte13g00651 1068 MobiDBLite consensus disorder prediction 721 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00651 Pte-Chr13 5108872 5114776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00651 64 411 C2H2 Transcription Factor Family AT4G04885 36.565 6.54e-52 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte13g00651 CID 1.3e-11 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00651 K14400 - qsa:O6P43_009520 868.996