Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00647 ATGGAGTTCTGGGGTGCTGAGGTAAAAAATGGAGAATCTTATAAGGTGGTGCCTGATGAGAACAAGCTCGTCCACATTTCACAGGCTTCTCTGGGTGTGGTGAAAAAGGATAAAGGAAATGAACAAGTCCATTTATTTGTCAAAATTGGTGATCAAAAACTTGGACTTGATTCTGATGAGATGATTCCCTCAATTCCATCTGATGGTGGAAAGCCCAACCCTGAGCAATCTACAAAGACGAAACCTGCAGCATCTAAACAAAAGGTGAAGATAGTGGATCCTAAGGAAGATGGAATAGCCAAGCTCAAAGATGATGGTGGTGTTGGGGATGAGGACGATTTGTCTTCGTATGATGATGATTCTGAGGATTCTGAGGGTGCCTCCGATGAAGATATGGTTACTATGAATGGTGAGGTGGAAACTAGTGATGACGAAGATGACGACAGCATGCAAAGTGAGGATGATGAAACCCCGAAAAAGATTGGATCGAGCAAGAAGAGGCCTTTGGAGTCAACCAAGAAAACTCCTGTTTCAGACAAGAAAGCAAAACTGGTCACTCCACAAAAGACCGATGGGAAGAAAGTTGGTGGACACACTGCTACTCCGCATCCAGCTAAGCAGGCTGGCAAGCTAAATAAGAAGGAGGAGACTAAGCAAGCAACTCCGAAATCAGGCGGAGATCACAGTTGCAAGTCCTGCAACAGATCTTTTAAAACAGACGAAGGTTTGCAATCTCATAATAAGGCAAAACACAGTGCTGGAAAATAG 768 0.4388 MEFWGAEVKNGESYKVVPDENKLVHISQASLGVVKKDKGNEQVHLFVKIGDQKLGLDSDEMIPSIPSDGGKPNPEQSTKTKPAASKQKVKIVDPKEDGIAKLKDDGGVGDEDDLSSYDDDSEDSEGASDEDMVTMNGEVETSDDEDDDSMQSEDDETPKKIGSSKKRPLESTKKTPVSDKKAKLVTPQKTDGKKVGGHTATPHPAKQAGKLNKKEETKQATPKSGGDHSCKSCNRSFKTDEGLQSHNKAKHSAGK* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00647 255 MobiDBLite consensus disorder prediction 86 110 - -
Pte13g00647 255 ProSitePatterns Zinc finger C2H2 type domain signature. 230 251 IPR013087 -
Pte13g00647 255 Gene3D Nucleoplasmin core domain 1 57 - -
Pte13g00647 255 MobiDBLite consensus disorder prediction 208 222 - -
Pte13g00647 255 MobiDBLite consensus disorder prediction 136 152 - -
Pte13g00647 255 MobiDBLite consensus disorder prediction 223 240 - -
Pte13g00647 255 MobiDBLite consensus disorder prediction 153 188 - -
Pte13g00647 255 MobiDBLite consensus disorder prediction 111 129 - -
Pte13g00647 255 MobiDBLite consensus disorder prediction 55 255 - -
Pte13g00647 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 255 IPR013087 -
Pte13g00647 255 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00647 Pte-Chr13 5059847 5063750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00647 1 254 C2H2 Transcription Factor Family AT5G03740 39.057 8.83e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte13g00647 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00647 - - tss:122671431 215.312