Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00632 ATGCAGTTAAATTTGGTTGTGAATCGAGGGCAAGAGACACTGAAAGTGAATCCCGATATGGACTGGAACGGAAGCTTTGTGCGACCAGCAGACTCTCCCTTAAGCTTCTTCTCCAACTATGCCAACAACTACGACCAATACCCTTATCAAGAGATGGAGGCGAAGTATCTGGTGGGTAGTTCAAGTCTGGAGTTAGCACAAGGGATGCTACCGGCTGCAATGGAGAGAAGTTACATAGGAAACCAGGAGAAGAAGAAGCGGTTGACAAGCGAGCAGTTAGATTCATTGGAAAGGAGTTTTCAGGAGGAGATAAAGCTGGATCCTGACAGGAAGATGAAGCTGTCCAGAGAACTTGGACTGCAGCCGCGTCAAATTGCTGTTTGGTTTCAGAATAGGCGTGCAAGGTGGAAGAATAAACAGCTAGAGAACCTGTACGATTCTCTCAAACACGATTTTGATGTTATCTCTAGGGAAAAGCTCAAGCTTCAAGAAGAGGTGACAAAATTGAAGGCTATGCTGAGAAATCAAGCTACAAGAAACCAAGCATCGTTAGCTTACACAGAGATCTCGGGTGAAGAGAGGACAGTGGAAAGCCCTTCAGTTGCGATGCGCAGTTCCAGCAGGCTATTACCCATTGCGAGTAATGAAAACATGGCAGTTGGAAGCAACGTTTTCCCTATGGAGGATTACAGTAACAAAACTGTTCCAACTCCTTATTACTGGGCAGTTTCTCAATGA 738 0.4539 MQLNLVVNRGQETLKVNPDMDWNGSFVRPADSPLSFFSNYANNYDQYPYQEMEAKYLVGSSSLELAQGMLPAAMERSYIGNQEKKKRLTSEQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKNKQLENLYDSLKHDFDVISREKLKLQEEVTKLKAMLRNQATRNQASLAYTEISGEERTVESPSVAMRSSSRLLPIASNENMAVGSNVFPMEDYSNKTVPTPYYWAVSQ* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00632 245 CDD homeodomain 84 140 IPR001356 GO:0003677
Pte13g00632 245 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Pte13g00632 245 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Pte13g00632 245 Pfam Homeodomain 84 138 IPR001356 GO:0003677
Pte13g00632 245 Coils Coil 131 158 - -
Pte13g00632 245 Coils Coil 79 99 - -
Pte13g00632 245 Pfam Homeobox associated leucine zipper 139 173 IPR003106 GO:0006355|GO:0043565
Pte13g00632 245 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Pte13g00632 245 SMART HOX_1 82 143 IPR001356 GO:0003677
Pte13g00632 245 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Pte13g00632 245 FunFam Putative homeobox-leucine zipper protein ATHB-51 81 144 - -
Pte13g00632 245 Gene3D - 77 144 - -
Pte13g00632 245 SUPERFAMILY Homeodomain-like 70 141 IPR009057 -
Pte13g00632 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 76 193 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00632 Pte-Chr13 4897414 4898987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00632 22 178 Homeobox Transcription Factor Family AT2G36610 48.571 4.46e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte13g00632 Homeodomain 7.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00632 - - qsa:O6P43_005865 239.965