Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00625 ATGGATAACGACACGGGATCATCTTCTCCATCTTCAGTGTCCTATGTCACTCCAATCCTCATCTCCTTGATTGGGATTGCTTCATCTTCTTTAGCAATTATACTGTACCATCTCATTCTCATAAAATTCTGCATAAGGCATGACCAACAGCTAAGTCAAGATATCAGCGCCAACGACACAAGGCAACAAGATGAATTAGGTAGAAGCCAATGGGATATGGGGTTAGACGAAGACGTCCTTAACTCAATACCAGTTGTCTCGTACTCAAATCAGAAAGCAAAATTGCTTCGAGTGGATCAAAGTCATGAATGTATCATTTGCTTGGGTGAATTAGAACATGGGGACAAGGTTCGCTTGTTGCCGACATGCACGCATGCCTTTCACGTTTCATGCATTGATAAGTGGTTCACCCAACATTCGAGATGCCCCCTGTGCCGATGTCCCATAGTTGCTCCAGTTCTTGCTCCGGAAACTGACCATGGTGGAGATTGCATCGTCTTAGACTTACCTGCTGCAGATGCTAATGAGCTTCTGCAGGTTCAGCAAGAAAGTGGTAATTCTGGTGATTCCGATGCTTCCTGTTCGGGTTCGTCAGGGATGGATGTATTCATGGGTGGCTCGTTGAAACATTCTGTGTCTTTCAAGTTGCCTAGAGATCAACAAAAGGCTCAAACTCAGGTTACATGTTTGAAAAGGTCTTTGTCCATGGACCAATGTTATTATATTGCCAGAGTGAAAATGCAAAGGGATCGTGAAAAAACTATGGCTCCTCCTCTAAACTAG 783 0.4393 MDNDTGSSSPSSVSYVTPILISLIGIASSSLAIILYHLILIKFCIRHDQQLSQDISANDTRQQDELGRSQWDMGLDEDVLNSIPVVSYSNQKAKLLRVDQSHECIICLGELEHGDKVRLLPTCTHAFHVSCIDKWFTQHSRCPLCRCPIVAPVLAPETDHGGDCIVLDLPAADANELLQVQQESGNSGDSDASCSGSSGMDVFMGGSLKHSVSFKLPRDQQKAQTQVTCLKRSLSMDQCYYIARVKMQRDREKTMAPPLN* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00625 260 SMART ring_2 104 145 IPR001841 -
Pte13g00625 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 151 IPR013083 -
Pte13g00625 260 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Pte13g00625 260 SUPERFAMILY RING/U-box 103 152 - -
Pte13g00625 260 FunFam E3 ubiquitin-protein ligase ATL6 63 152 - -
Pte13g00625 260 CDD RING-H2_EL5-like 103 146 - -
Pte13g00625 260 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 150 IPR044675 -
Pte13g00625 260 Pfam Ring finger domain 103 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00625 Pte-Chr13 4845561 4846346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00625 21 167 C3H Transcription Factor Family AT5G17600 37.086 2.81e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00625 - - qsa:O6P43_006588 167.548