Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00621 ATGAGTTCGTCCTCAGGTCAGAGCAGTGCTTATGATCTCTCCTTTAAGATCTTGTTGATCGGAGATTCAGGTGTCGGGAAGAGTAGTTTACTAGTGAGCTTCATTTCTAATACTGTTGAAGATCTTTCTCCCACCATTGGTGTTGATTTCAAAATCAAGCAGCTGACAGTGGGTGGAAAGAGGTTAAAGCTAACTATTTGGGATACTGCTGGCCAGGAGAGGTTCAGAACTCTAACAAGTTCGTATTATAGAGGAGCACAAGGAATCATTCTTGTCTATGATGTGACTCGGAGAGAAACCTTTACAAACTTATCAGAAGTATGGTCTAAAGAAGTCGAACTCTATTCAACTAATCAGGATTGTGTGAAGATGCTGGTTGGAAATAAAGTTGATAAAGATTCTGAGAGAGCGGTGAGTAGAGAAGAGGGCATTACTCTTGCAAAAGAGCTGGGATCTCTATTTCTTGAATGCAGTGCTAAAACTCGAGAAAATGTGGAGCAATGTTTTGAAGAACTCGCTCTGAAGGACGTCTTATTTGCTAAAAATACAGCTGAACTTGTAGTTGTCCTTGTAAAGCACAAGGGCAACTTCGATCTGTACATCAAAGCAAAAATGCACACTGTACCAGTGCGGTCCACCTTATCATGCCAAATAAGAATTCTGGTCACTTACCCTTTATGGGCATTTTCCACCATTCTGTGGCTCTTCGTTCTTGTTCTTCATATAAATACCAATTCAAGTCCACTTCCTATGCAAACAATGATGGAATATCCAATAGCCATGCAAGAAGTAGGAATGCGTAAAGGCCCCTGGCTTGAAGAGGAAGATGAGAGGCTGACCACTTTTGTCACCCTTTTAGGAGAACGAAAGTGGGATTCCTTAGCAAAAACTTCAGGGCTTAGGCGCAGTGGCAAAAGTTGCAGGTTGCGGTGGTTGAATTATCTCCGCCCAAATCTTAAGCATGGACCTTTTAGTGCTGAGGAAGAAATCACTATCATTCAACTTCAAAAGCAATGGGGCAACAAGTGGTCAAGGATTGCAAGAAGGCTCCCAGGAAGAACTGATAATGAGATTAAAAACTATTGGAGAACTCATTTGAGAAAGAAAACCGAATCAGAACAAGAAGATGGCTCTCAGTGGAATTTGGACTGGGAGGGGCAAGGCTTCTATGATCACAAAAGATTCATCCATGTTGAAAACTGCAACAAAGTCCACAATCGTTCAAACAATGACTTGGACAAATCCAATGACTCTCTTTACTCATCAGACAGCTGGGAACTAAGGAGATCGCCTTATGAAACGAGAATGTCAGATTGGATAGGTAGTCTGCATAGTTGTGTTCCATGTGAAACAGAAAGTAGTGAGTTCAATAGCATGGAGTCATATGAATGGTTTACGCCATGGATCGCAGATAACAACAATATTTGGGACTATTCTGACGTCCTCTGGGATATGAAATATTAA 1464 0.4139 MSSSSGQSSAYDLSFKILLIGDSGVGKSSLLVSFISNTVEDLSPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSEVWSKEVELYSTNQDCVKMLVGNKVDKDSERAVSREEGITLAKELGSLFLECSAKTRENVEQCFEELALKDVLFAKNTAELVVVLVKHKGNFDLYIKAKMHTVPVRSTLSCQIRILVTYPLWAFSTILWLFVLVLHINTNSSPLPMQTMMEYPIAMQEVGMRKGPWLEEEDERLTTFVTLLGERKWDSLAKTSGLRRSGKSCRLRWLNYLRPNLKHGPFSAEEEITIIQLQKQWGNKWSRIARRLPGRTDNEIKNYWRTHLRKKTESEQEDGSQWNLDWEGQGFYDHKRFIHVENCNKVHNRSNNDLDKSNDSLYSSDSWELRRSPYETRMSDWIGSLHSCVPCETESSEFNSMESYEWFTPWIADNNNIWDYSDVLWDMKY* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00621 487 NCBIfam small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Pte13g00621 487 PANTHER RAS-RELATED PROTEIN RAB 14 175 - -
Pte13g00621 487 CDD Rab18 15 175 - -
Pte13g00621 487 SMART rho_sub_3 17 180 IPR001806 GO:0003924|GO:0005525
Pte13g00621 487 CDD SANT 323 366 IPR001005 -
Pte13g00621 487 Pfam Ras family 16 173 IPR001806 GO:0003924|GO:0005525
Pte13g00621 487 ProSiteProfiles small GTPase Ras family profile. 7 233 IPR001806 GO:0003924|GO:0005525
Pte13g00621 487 ProSiteProfiles Myb-like domain profile. 316 366 IPR001005 -
Pte13g00621 487 ProSiteProfiles small GTPase Rho family profile. 8 188 - -
Pte13g00621 487 SMART sant 267 317 IPR001005 -
Pte13g00621 487 SMART sant 320 368 IPR001005 -
Pte13g00621 487 Gene3D - 323 369 - -
Pte13g00621 487 FunFam Ras-related protein RABC1 8 196 - -
Pte13g00621 487 ProSiteProfiles Myb-like domain profile. 263 315 IPR001005 -
Pte13g00621 487 FunFam Myb transcription factor 268 320 - -
Pte13g00621 487 PRINTS Transforming protein P21 ras signature 55 77 - -
Pte13g00621 487 PRINTS Transforming protein P21 ras signature 154 176 - -
Pte13g00621 487 PRINTS Transforming protein P21 ras signature 15 36 - -
Pte13g00621 487 PRINTS Transforming protein P21 ras signature 119 132 - -
Pte13g00621 487 PRINTS Transforming protein P21 ras signature 37 53 - -
Pte13g00621 487 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 267 315 IPR017930 -
Pte13g00621 487 Gene3D - 268 320 - -
Pte13g00621 487 ProSiteProfiles small GTPase Arf family profile. 8 177 - -
Pte13g00621 487 CDD SANT 270 315 IPR001005 -
Pte13g00621 487 SMART ras_sub_4 12 179 - -
Pte13g00621 487 ProSiteProfiles small GTPase Rab1 family profile. 10 216 - -
Pte13g00621 487 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 316 370 IPR017930 -
Pte13g00621 487 SUPERFAMILY Homeodomain-like 265 362 IPR009057 -
Pte13g00621 487 Pfam Myb-like DNA-binding domain 268 315 IPR001005 -
Pte13g00621 487 Pfam Myb-like DNA-binding domain 322 366 IPR001005 -
Pte13g00621 487 SMART rab_sub_5 15 181 - -
Pte13g00621 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 173 IPR027417 -
Pte13g00621 487 Gene3D - 1 176 IPR027417 -
Pte13g00621 487 SMART ran_sub_2 20 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00621 Pte-Chr13 4804078 4809538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00621 267 374 MYB Transcription Factor Family AT5G59780 62.037 1.03e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte13g00621 Ras 2.5e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00621 K07910 - zju:107406393 320.087