Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00620 ATGTCCCACATTGCCTGCATTTTCCCATTATGCCTTCTGAGTTCACTTTCATTGCTTGCTGGAGCCATGCTGAACCACACTCTTCCTGGTCAACATCCCGACCCCGAAGCTGTTGTGAGAGAAGTTCATAGGAGAGTAAATGCTTCTATGACTAGAAGGCAAATGCTGCAATTTTCACAGGACGACTTGTCCTCTAACTGTCTAACGGGGAACCCCATTGATGACTGTTGGAAATGTGACCCGGACTGGCCTCACAATCGTCAAAGACTGGCTGATTGTGCAATTGGGTTTGGCCAGTACGCTCTTGGTGGCAAGAATGGAGAATTGTACATAGTGACTGACTCTTCGGACGATGATGCTGTAAATCCAAAGCCAGGTACTCTGAGGTACGCTGTGATACAGCCCCAGCCCCTATGGATTGTGTTCCCAGGAAATATGATGATTAAGCTCTCGCAGGAGCTTATTTTTAACAGCTATAAGACTCTTGATGGGCGTGGAGCCAATGTTCACATCGTTGGCGGTGGCTGCATTACTCTGCAGTACATAAGCAATGTTATCATTCACAACATCCATATTCATCATTGTCATCCTTCAGGAGAAACTAATGTGCGGTCGAGTCCAACACATTACGGGTGGCGCACGAAATCTGACGGTGATGGGATATCCATATTTGCCTCCAAAGACATATGGATAGACCACTGTACTCTGTCCCACTGTGCGGATGGCTTGATAGATGCAGTAATGGGATCGACGGCCATTACAATTTCAAACAACTATTTCTTCCATCACGATGAAGTGATGTTATTGGGTCACAGTGATGATTATAAACCAGATGAAGGCATGCAGGTGACCATAGCCTTCAACCATTTTGGTGAGAATCTAGTGCAGCGCATGCCTAGGTGCAGGCTTGGTTACATTCATGTTGTGAACAACGATTACACACATTGGGAGATGTATGCTATAGGTGGCAGTGGCAACCCTACCATTAATAGCCAGGGCAATCGTTATACTGCACCATCCAATCCCTTTGCTAAAGAGGTAACCAAAAGGGTGGACACTGCAGAGGGAGAGTGGAAGGATTGGAATTGGAGATCTGATGGGGATGTGTTGGTGAATGGGGCATTCTTTGTGGCATCTGGTGCAGGAGCTGAGTTTAGGTACGAGAAGGCTTACAGTGTAGAACCAAAATCTGCTTCTTCCATTGACCAACTTACTATGCACGCTGGAGCACTTGGGGTTGGAGGCAGGAACAACAATCTGGGAATGTGGAGCACCGGACCCGATGGCGGTGGTGGAACCGGTTCTGGGTCAGGCCCTGATTACACGGATGACATGTCCTTGAGCAGAAGGCTACTTCCACCTTCCCCACATTACTCTCTCCTAAGTTTTCTCATTGCTTTTTCATGTTTATTGTCATGTAGCTTACCTCTGAAAATCAAGGTACTATGA 1449 0.4686 MSHIACIFPLCLLSSLSLLAGAMLNHTLPGQHPDPEAVVREVHRRVNASMTRRQMLQFSQDDLSSNCLTGNPIDDCWKCDPDWPHNRQRLADCAIGFGQYALGGKNGELYIVTDSSDDDAVNPKPGTLRYAVIQPQPLWIVFPGNMMIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCHPSGETNVRSSPTHYGWRTKSDGDGISIFASKDIWIDHCTLSHCADGLIDAVMGSTAITISNNYFFHHDEVMLLGHSDDYKPDEGMQVTIAFNHFGENLVQRMPRCRLGYIHVVNNDYTHWEMYAIGGSGNPTINSQGNRYTAPSNPFAKEVTKRVDTAEGEWKDWNWRSDGDVLVNGAFFVASGAGAEFRYEKAYSVEPKSASSIDQLTMHAGALGVGGRNNNLGMWSTGPDGGGGTGSGSGPDYTDDMSLSRRLLPPSPHYSLLSFLIAFSCLLSCSLPLKIKVL* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00620 482 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Pte13g00620 482 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Pte13g00620 482 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Pte13g00620 482 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Pte13g00620 482 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Pte13g00620 482 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Pte13g00620 482 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Pte13g00620 482 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Pte13g00620 482 FunFam Pectate lyase 70 412 - -
Pte13g00620 482 Gene3D - 70 412 IPR012334 -
Pte13g00620 482 SMART amb_all 145 342 IPR002022 -
Pte13g00620 482 Pfam Pectate lyase 155 334 IPR002022 -
Pte13g00620 482 SUPERFAMILY Pectin lyase-like 71 401 IPR011050 -
Pte13g00620 482 PANTHER PECTATE LYASE 18-RELATED 27 412 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00620 Pte-Chr13 4799605 4802626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00620 2 466 Polysaccharide Lyase AT3G53190 74.364 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00620 K01728 - qsa:O6P43_006610 757.288