Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00616 ATGCAGTTGGGTAATTTCATTCACTATATGGCAACATTTGTGTCTGGCTTTGTGGTTGGTTTCACTGCTGTGTGGCAGTTAGCTCTTGTTACACTTGCTGTTGTTCCTTTGATAGCTATAATCGGAGCCGTTCACACTACCACTTTAGCCAAATTTTCTGGGAAAAGTCAGGAAGCTCTATCACAAGCAGGGAACACAGTTGAACAGACCATTGTTCAAATTCGAGTTGTTTTGGCATACGTTGGCGAGTCCAGAGCATTGCAAGCTTACTCATCAGCACTAAGAGTTGCACAGAGAATAGGCTACAGGATTGGATTGGCCAAGGGAATGGGGTTAGGGGCAACTTATTTTGTTGTCTTCTGTAGCTACGCGCTTCTGCTTTGGTACGGTGGTTATCTTGTTAGACATCACTACACCAACGGAGGGCTAGCAATAGCCACCATGTTTGCTGTTATGATTGGTGGACTGGGTTTGGGACAGTCGGCACCAAGCATGAGCGCATTTGCTAAGGCCAAAGTTGCAGCTGCTAAGATTTTTCGTATAATTGATCACAAGCCTAGTATTGACCGAAACAATGAATCAGGTTTGGAATTGGGGTCTGTTTCTGGGTTGATTGAACTGGAACACGTTGACTTCTCTTATCCTTCAAGACCAGATGTTAAGATTCTCAATGGTTTCACCTTAAGCGTACCGGCAGGCAAGACCATTGCTTTGGTGGGGAGCAGTGGCTCTGGCAAGAGTACAGTTGTCTCCCTCATTGAGAGATTCTATGATCCTACATCAGGAAAAGTTTTGTTAGATGGGCACGACATAAAAACATTGAGACTTAGGTGGTTGAGGCAGCAAATTGGACTAGTTAGCCAAGAGCCAGCATTGTTTGCTACCACCATCAAAGAAAATATACTGCTGGGTCGTCCTGATGCTGATGAAGGTGAGATTGAAGAAGCTGCTAGAGTAGCTAATGCTCACGCGTTCATTGTCAAGCTTCCAGAAGGCTTTGAGACACAGGTGGGAGAGAGAGGGCTGCAACTCTCAGGAGGCCAGAAGCAAAGGATTGCTATAGCAAGGGCAATGCTGAAAAACCCAGCAATTTTGCTCCTAGATGAGGCAACAAGTGCATTAGACTCTGAGTCAGAAAAGCTAGTGCAAGAGGCCCTTGACCGCTTCATGATCGGACGCACAACTCTAGTAATTGCTCATCGTCTGTCTACTATTCGAAAAGCTGACCTTGTAGCTGTACTGCAGCAAGGCAGTGTTTCAGAAATAGGAACTCATGATGAACTCATTTGTAAGGGAGAAAATGGCTCCTATGCCAAGCTCATCCGTATGCAGGAGACGGCATATGAAAATGCACTTAATAATGCCAGAAAAAGTAGTGCAAGGCCTTCAAGTGCTAGGAATTCAGTAAGCTCACCAATAATTGCCCGGAATTCGTCTTATGGCCGATCACCATACTCACGCCGCCTTTCGGACTTCTCTACTTCTGATTTCAGTCTCTCCCTTGATGCCTCACATGCCAATTACCGCCTAGAGAAACTTGCCTTCAAAGAGCAAGCAAGTTCTTTTTGGCGCCTTGCAAAAATGAACTCTCCTGAATGGGTTTATGCCTTAGTTGGTTCAATTGGCTCTGTTGTTTGTGGGTCCCTCAGTGCTTTCTTTGCTTATGTTCTGAGTGCTGTCCTCAGCGTTTACTATAGTCAAGACCATGCATATATGATCAGACAAATTGATAAGTACTGCTACTTGCTGATTGGGCTGTCATCAGCTGCTCTTCTCTTCAACACATTGCAGCATTCCTTCTGGGATATTGTGGGTGAAAATCTCACTAAACGCGTTAGGGAGAAAATGCTGACTACAGTACTTCAAAATGAAATGGCTTGGTTTGATCAGGAGGAGAATGAGAGTGCCAGGATTGCTGCTAGGTTGGCTCTTGATGCTAACAATGTGAGATCAGCTATTGGGGATCGTATTTCAGTGATTGTGCAGAACACTGCATTGATGCTAGTCGCCTGCACAGCTGGGTTTGTTTTGCAGTGGCGCCTTGCTCTTGTCCTTGTTGCTGTTTTTCCAGTAGTTGTTGCAGCTACCGTTTTGCAGAAAATGTTCATAACTGGTTTTTCGGGAGACCTAGAGCATGCGCATGCCAAGGCTACGCAGTTGGCAGGGGAGGCCATAGCCAATGTTAGAACTGTTGCTGCCTTTAACTCAGAAGCAAAAATTGTCGGTCTTTTCACCACTAACCTGCAGATTCCTCTCCGTCGTTGTTTCTGGAAAGGACAGATTTCTGGAAGTGGGTTTGGAGTAGCTCAGTTTGCTCTTTATGGTTCCTATGCCCTTGGTCTTTGGTATGCTTCTTGGCTTGTGAAGCACGGCATTTCTGATTTCTCCAAAACGATCAGAGTCTTTATGGTCCTCATGGTGTCTGCCAATGGCGCAGCTGAAACATTAACACTGGCTCCTGACTTCATCAAGGGAGGCCAAGCCATGAAGTCAGTGTTTGATCTTCTTGATCGTAGGACTGAAATTGAGCCTAACGATTCTGATGCCATTCCTGTTCCTGATCGTATACGAGGAGAAGTTGAATTAAAGCATGTAGACTTCTCTTACCCTACTCGCCCGGACGTGCCAATTTTCCGTGACCTTAGTTTGCGAGCAAGGGCAGGGAAGACTCTTGCCCTTGTAGGACCTAGTGGCTGTGGGAAGAGTTCAGTCGTTGCTCTCATTCAGCGATTCTACGATCCAACATCAGGAAGAGTTATGGTTGATGGGAAGGACGTTAGAAAGTACAATCTCAAATCCTTGAGACGACACATTGCAGTGGTACCCCAGGAGCCGTGCCTCTTTGCTACGACAATTTATGAAAACATTGCTTATGGTCATGAATCAGCAACACAAGCTGAGATTGTTGAAGCAGCAACTCTAGCCAATGCGCACAAATTCATTTCAAGTTTGCCTGATGGGTACAAGACATTTGTTGGTGAGAGAGGAGTTCAACTTTCAGGAGGGCAAAAACAGAGAATAGCAATTGCCCGTGCACTTGTGAGGAAGGCTGAAATTATGCTTCTCGATGAAGCAACAAGTGCCCTTGATGCTGAATCTGAAAGATCAGTACAGGAGGCTCTAGAACGAGCCTGCTCAGGAAAAACAACCATTGTCATTGCACATAGGCTTTCGACCATTAGAAATGCCCATGTGATTGCTGTCATCGATGACGGGAAAGTGGCTGAGCAGGGATCACATTCTCAGTTGTTGAAAACCCATCCTGATGGATGCTATGCTCGAATGATTCAATTGCAAAGGTTCACCCAAAGCCAGGTAATTGGATTCGCCTCAGGTTCAAGTTCGTCAGCAAAACCAAAAGACGATGGCGAAAGAGAGAGCCAGTAA 3387 0.4562 MQLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAIIGAVHTTTLAKFSGKSQEALSQAGNTVEQTIVQIRVVLAYVGESRALQAYSSALRVAQRIGYRIGLAKGMGLGATYFVVFCSYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGLGLGQSAPSMSAFAKAKVAAAKIFRIIDHKPSIDRNNESGLELGSVSGLIELEHVDFSYPSRPDVKILNGFTLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGKVLLDGHDIKTLRLRWLRQQIGLVSQEPALFATTIKENILLGRPDADEGEIEEAARVANAHAFIVKLPEGFETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELICKGENGSYAKLIRMQETAYENALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHANYRLEKLAFKEQASSFWRLAKMNSPEWVYALVGSIGSVVCGSLSAFFAYVLSAVLSVYYSQDHAYMIRQIDKYCYLLIGLSSAALLFNTLQHSFWDIVGENLTKRVREKMLTTVLQNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFITGFSGDLEHAHAKATQLAGEAIANVRTVAAFNSEAKIVGLFTTNLQIPLRRCFWKGQISGSGFGVAQFALYGSYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGQAMKSVFDLLDRRTEIEPNDSDAIPVPDRIRGEVELKHVDFSYPTRPDVPIFRDLSLRARAGKTLALVGPSGCGKSSVVALIQRFYDPTSGRVMVDGKDVRKYNLKSLRRHIAVVPQEPCLFATTIYENIAYGHESATQAEIVEAATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALERACSGKTTIVIAHRLSTIRNAHVIAVIDDGKVAEQGSHSQLLKTHPDGCYARMIQLQRFTQSQVIGFASGSSSSAKPKDDGERESQ* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00616 1128 ProSitePatterns ABC transporters family signature. 344 358 IPR017871 GO:0005524|GO:0016887
Pte13g00616 1128 ProSitePatterns ABC transporters family signature. 999 1013 IPR017871 GO:0005524|GO:0016887
Pte13g00616 1128 Gene3D - 851 1107 IPR027417 -
Pte13g00616 1128 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 860 1096 IPR003439 GO:0005524
Pte13g00616 1128 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 205 441 IPR003439 GO:0005524
Pte13g00616 1128 PANTHER ABC TRANSPORTER B FAMILY 3 548 IPR039421 -
Pte13g00616 1128 FunFam ABC transporter B family member 1 516 825 - -
Pte13g00616 1128 Pfam ABC transporter 879 1027 IPR003439 GO:0005524
Pte13g00616 1128 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 537 824 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte13g00616 1128 Pfam ABC transporter 223 372 IPR003439 GO:0005524
Pte13g00616 1128 CDD ABC_MTABC3_MDL1_MDL2 860 1099 - -
Pte13g00616 1128 Gene3D ABC transporter type 1, transmembrane domain 2 833 IPR036640 GO:0005524|GO:0016020
Pte13g00616 1128 FunFam ABC transporter B family member 1 195 445 - -
Pte13g00616 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 444 IPR027417 -
Pte13g00616 1128 SUPERFAMILY ABC transporter transmembrane region 524 844 IPR036640 GO:0005524|GO:0016020
Pte13g00616 1128 Pfam ABC transporter transmembrane region 3 154 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte13g00616 1128 Pfam ABC transporter transmembrane region 541 807 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte13g00616 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 852 1099 IPR027417 -
Pte13g00616 1128 CDD ABC_MTABC3_MDL1_MDL2 205 444 - -
Pte13g00616 1128 Gene3D - 203 468 IPR027417 -
Pte13g00616 1128 SMART AAA_5 232 418 IPR003593 GO:0016887
Pte13g00616 1128 SMART AAA_5 887 1079 IPR003593 GO:0016887
Pte13g00616 1128 SUPERFAMILY ABC transporter transmembrane region 2 186 IPR036640 GO:0005524|GO:0016020
Pte13g00616 1128 CDD ABC_6TM_Pgp_ABCB1_D1_like 3 166 - -
Pte13g00616 1128 FunFam ABC transporter B family member 1 851 1100 - -
Pte13g00616 1128 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 170 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte13g00616 1128 CDD ABC_6TM_Pgp_ABCB1_D2_like 526 842 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00616 Pte-Chr13 4725304 4731297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00616 2 1121 Calmodulin-binding Proteins AT2G36910 87.690 0.0 2008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00616 K05658 - qsa:O6P43_010256 1967.97