Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00603 ATGGGAGAGGAAACTGCTTGTACTGAAGTTTTAAGCTATGAAGGGGAGGGTGATGGTAACATTTCTAGGAATGAACTGATGAGAGACCATCCATGTATTGATGCTGATGATACATTGCCAAGCAAGAAAGTGAAAGAGTTGTCGAATGATGACATTCGGTCTGAGGTCTTGAATCCTAAGGTTTCTCCTAAAGAGAATGCTTCAAATTCTCAAGATATCACCAGTCACTCGTCTGAAGCAGAGTATGTTTATCAAGAACAATGTGGGGAGTTGTCATCAACCTGTTTGGAGAACTCGTGTTATGAGGAGGCCCTTAGTGATGGAGAGGACAATCCGAATAATATTACTGCTTATGAAGATAATAACATTGTGTGTGATGATGTTATGACGTCTCGTATTGTACTGGAAATTCCTAAGCATGCCATTTCAACCGGAATTAGAAAAATTACTTTCAAGTTCAGTAAGAGAAAACAAGAGTATAAGAATCAGCCCCCTGAAAATCAGACTTATGGTGCTTATGGCTTTGAAGAGGAAGACAACTACGATGAATCTTCTGATATTTGTAATAGCAGAATGGGTATCGAAAACCAGTACGGGATGGAGTATTTTGGAGTCAGAAATTCTTCCCGTGAAAAGGTTGAAGCAAATAGCTACCCTGCGAATGTCAAGAAGCTGTTATCAACAGGAATTCTAGATGGAGCGAGAGTAAAGTACATCTCTAGCTCTGGGGATGTCGAGCTTTGTGGTATCATAGAAGCTGGCGGTTATCTGTGTGGCTGTTGCACCTGCAATTACTCAAGAGTGCGAAGTGCCTATGAGTTTGAGCAGCATGCTGGTGCCAAAACTAGACATCCGAATAATCACATCTACCTGGAGAATGGAAGGCCTATATATAAAATCATTCAAGAAATGAAGACAGCTCCAATTGACATATTGGATGAAGTGTTAAAGGATGTGGCCGGTTCTTCTCTGAATGAGCACGCCTTCCGGGTTTGGAAAGCAAGCATAAACTATAGGAACCAGAAGGTTGTCGAAGATAGGTATGACGACCACAAGCCTGCCCCTTGTTCATTGATAAGTCAAGCTTCAAAAAGTGTGTACACTTCGCCGTATTCCTATTCTTCTCACAACCCTGTTGAGCAGCCAATTTTCTTGATGCGGAAAACTGAAGAGTGGAAATGTCCTGTAAAGAGGCCGGGCCCTTACATTGCTAGCTCATTTGTTCAACAGAAGAGAACTGTTGATGGTTACCCAAAACGAAGAGATAATGATCTGCACCGATTACTTTTTATGCCAAATGGACTTCCAGACGGTGCTGAACTGGCATACTATGTGAAAGGACAACTATTACTTGGTGGTTACAAGCAAGGAAATGGTATAATGTGTAGTTGTTGCAACAGAGAGGTCAGCCCTTCACAGTTTGAAGCCCATGCAGGAATGGCTGCTAGGCGTCAACCCTATCGTCACATTTATACATCTAATGGACTGACGCTTCACGACATAGCTCTCTCTTTGGCAAATGGACAAAATATTACCATTGGTGACAACAACGATATGTGTGTGGTGTGTGGTGGTGGAGGAGACTTGGTTCCATGTAATGCATGTTCTAGGGCTTTTCATTTAGCCTGCTTGGACTTGCAGCATGTTGCTGATGGTACATGGCTCTGTATGAATTGTAGATATGAGGCCGCTGATGGCAGAGAGGTTGCTTCAAGAGAGTTTTCTGGAACAGGCAGACGACAATCATCAAGGATTGTTAACGCATCTAAAATTGAAATTGGGGGCTGTGTAGTATGCAGGGAGAATGATTTCAGTGTCACTAAATTTGATGATAGGACAATCATCATCTGTGAGCAATGTGAGAAGGAATATCATGTCGGCTGCTTGCGGGCCAGTGGGCGCTGTGTGTTAAATGAGCTTCCCAGGGAAAAGTGGTTTTGCTGTGATGACTGCAGTTCCATACATGATGCCCTGCAAAATTCAGCTGCCAATGGTGCCGTGGTCATACCAGCTTCTTTATCAAGCATAATAAGTAAGAAGTATCTTCAGCGAGGATTGGGTCTTGATGTTTCAACTGTTATTGAGTGGAGAATTCTTAATGGAAAAAGTCGCTATCCTGGACATTTACCAATTCTTTCACGTGCTGCTGCGATTTTCCGGGAGTGTTTTGATCCAATTGTTGCAAAATCAGGTCGCGACCTGATCCCTGTGATGGTTTATGGGAGGAACATATCTGGCCAGGAGTTTGGGGGGATGTATTGTGTCGTTCTACTTGTGAAGTCTATGGTGGTATCTGCTGGTCTTCTCAGGATTTTCGGACGTGAAGTAGCTGAACTTCCTCTGATTGCTACATGCAGAGAACACCAAGGAAAAGGATATTTCCAAGTGTTATATTCTTGCGTGGAGAGACTGCTCTTCTCGTTGAATGTAGAAAATCTCGTACTACCTTCTGCTGAAGATGCAGAACCTATCTGGACACAGAAATTAGGCTTCAAAAAGATGAGTGAAGAGCAGTTATCCAGATACTTGAAGGAGGTGCAATTAACTATGTTCAAGGGAACGTCAATGCTGGAGAAGGCAGTGCAAATGAGAGCATATTGA 2601 0.4287 MGEETACTEVLSYEGEGDGNISRNELMRDHPCIDADDTLPSKKVKELSNDDIRSEVLNPKVSPKENASNSQDITSHSSEAEYVYQEQCGELSSTCLENSCYEEALSDGEDNPNNITAYEDNNIVCDDVMTSRIVLEIPKHAISTGIRKITFKFSKRKQEYKNQPPENQTYGAYGFEEEDNYDESSDICNSRMGIENQYGMEYFGVRNSSREKVEANSYPANVKKLLSTGILDGARVKYISSSGDVELCGIIEAGGYLCGCCTCNYSRVRSAYEFEQHAGAKTRHPNNHIYLENGRPIYKIIQEMKTAPIDILDEVLKDVAGSSLNEHAFRVWKASINYRNQKVVEDRYDDHKPAPCSLISQASKSVYTSPYSYSSHNPVEQPIFLMRKTEEWKCPVKRPGPYIASSFVQQKRTVDGYPKRRDNDLHRLLFMPNGLPDGAELAYYVKGQLLLGGYKQGNGIMCSCCNREVSPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNITIGDNNDMCVVCGGGGDLVPCNACSRAFHLACLDLQHVADGTWLCMNCRYEAADGREVASREFSGTGRRQSSRIVNASKIEIGGCVVCRENDFSVTKFDDRTIIICEQCEKEYHVGCLRASGRCVLNELPREKWFCCDDCSSIHDALQNSAANGAVVIPASLSSIISKKYLQRGLGLDVSTVIEWRILNGKSRYPGHLPILSRAAAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLLVKSMVVSAGLLRIFGREVAELPLIATCREHQGKGYFQVLYSCVERLLFSLNVENLVLPSAEDAEPIWTQKLGFKKMSEEQLSRYLKEVQLTMFKGTSMLEKAVQMRAY* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00603 866 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 694 855 IPR000182 GO:0016747
Pte13g00603 866 SUPERFAMILY FYVE/PHD zinc finger 505 562 IPR011011 -
Pte13g00603 866 Pfam Tify domain binding domain 249 304 IPR032308 -
Pte13g00603 866 Pfam Tify domain binding domain 453 502 IPR032308 -
Pte13g00603 866 SMART PHD_3 595 652 IPR001965 -
Pte13g00603 866 SMART PHD_3 519 560 IPR001965 -
Pte13g00603 866 MobiDBLite consensus disorder prediction 33 76 - -
Pte13g00603 866 MobiDBLite consensus disorder prediction 61 76 - -
Pte13g00603 866 ProSitePatterns Zinc finger PHD-type signature. 520 559 IPR019786 -
Pte13g00603 866 ProSitePatterns Zinc finger PHD-type signature. 596 651 IPR019786 -
Pte13g00603 866 SUPERFAMILY FYVE/PHD zinc finger 592 649 IPR011011 -
Pte13g00603 866 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 509 590 IPR013083 -
Pte13g00603 866 PANTHER AUTOIMMUNE REGULATOR 45 861 - -
Pte13g00603 866 MobiDBLite consensus disorder prediction 33 53 - -
Pte13g00603 866 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 654 IPR013083 -
Pte13g00603 866 Gene3D - 693 860 - -
Pte13g00603 866 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 745 838 IPR016181 -
Pte13g00603 866 ProSiteProfiles Zinc finger PHD-type profile. 593 654 IPR019787 -
Pte13g00603 866 ProSiteProfiles Zinc finger PHD-type profile. 517 562 IPR019787 -
Pte13g00603 866 Pfam PHD-finger 519 560 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00603 Pte-Chr13 4617373 4624388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00603 1 861 PHD Transcription Factor Family AT3G53680 50.799 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte13g00603 TDBD 3.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00603 - - qsa:O6P43_010398 1095.49