Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00597 ATGAAGAGAACCAGAGAAAGTTTTTTAGGGATGGAGAACTTTCACATGGGAAACTGTCTGTTACTGCTCTCTGGTCATGGCATAGAAACCAAGCAATCAAATGTCTTCGCCCCAGAAGTTTTTGAGTGCAAGACCTGCAACCGCCAGTTTCCATCGTTTCAAGCACTAGGAGGCCACCGGGCAAGCCACAAGAGGCCGAAACTGGAATCGGTAGCTAAAGCTCCGGCCCAATATTTGACCTTAGGAAACAAACCAAAGTTGCATGAGTGCTCCTTATGTGGTCTGAAATTTTCTCTTGGTCAGGCACTGGGAGGCCATATGAGGCGGCACAGAGCTGAACAAATGGGTGAAGTACTTCCTACCATAAACGACGTCGTTGCGAAAGTTCCAGTGCTGAAGAGATCAAATAGTACAAGAATAATGTGCTTGGACTTGAACTTGACGCCTCTGGAGAATGATCTAAAGTTGTTGTTCGGAAAAATGGCACCTAAAGTGGATGCTTTCGTCTAG 510 0.4608 MKRTRESFLGMENFHMGNCLLLLSGHGIETKQSNVFAPEVFECKTCNRQFPSFQALGGHRASHKRPKLESVAKAPAQYLTLGNKPKLHECSLCGLKFSLGQALGGHMRRHRAEQMGEVLPTINDVVAKVPVLKRSNSTRIMCLDLNLTPLENDLKLLFGKMAPKVDAFV* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00597 169 SMART c2h2final6 41 63 IPR013087 -
Pte13g00597 169 SMART c2h2final6 88 110 IPR013087 -
Pte13g00597 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Pte13g00597 169 PANTHER ZINC FINGER PROTEIN ZAT5 17 153 - -
Pte13g00597 169 SUPERFAMILY beta-beta-alpha zinc fingers 40 110 IPR036236 -
Pte13g00597 169 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Pte13g00597 169 Gene3D Classic Zinc Finger 39 110 - -
Pte13g00597 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Pte13g00597 169 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Pte13g00597 169 Pfam C2H2-type zinc finger 88 113 - -
Pte13g00597 169 Pfam C2H2-type zinc finger 40 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00597 Pte-Chr13 4567540 4568201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00597 1 166 C2H2 Transcription Factor Family AT2G37430 46.591 5.23e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte13g00597 zf-C2H2_6 5.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00597 - - qsa:O6P43_010388 231.106