Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00590 ATGGCGAGGATAAAGGTACACGAGTTGAGGAACAAGTCCAAGACAGATTTGCTGAACCAGTTGAAAGAACTCAAAGCAGAGCTTGCTTTGCTCCGCGTTGCCAAGGTCACTGGTGGTGCCCCTAACAAGCTCTCCAAAATCAAGGTGGTGAGATTGTCAATAGCGCAGGTACTGACTGTGATTTCCCAGAAGCAGAAAGCAGCTCTTAGAGAGGCTTACAGGAATAAGAAGTACTTGCCACTTGATCTCCGTCCCAAGAAGACTCGAGCAATTCGTAGGCGTCTTACCAAACGTCAGGTACAGTCAAAACGTACTTCTATTAGTAACAATAACATAGGAATTACTTTTTTGTTAGCGGCTTATATTTCGTCAACGCTTTAG 381 0.4462 MARIKVHELRNKSKTDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYRNKKYLPLDLRPKKTRAIRRRLTKRQVQSKRTSISNNNIGITFLLAAYISSTL* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00590 126 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pte13g00590 126 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Pte13g00590 126 Gene3D - 78 112 - -
Pte13g00590 126 PANTHER 60S RIBOSOMAL PROTEIN L35 1 104 IPR045059 GO:0000463|GO:0022625
Pte13g00590 126 FunFam 60S ribosomal protein L35 1 77 - -
Pte13g00590 126 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Pte13g00590 126 NCBIfam 50S ribosomal protein L29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pte13g00590 126 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pte13g00590 126 Coils Coil 14 34 - -
Pte13g00590 126 CDD Ribosomal_L29_HIP 8 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00590 Pte-Chr13 4521579 4529678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00590 1 99 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 90.909 2.15e-57 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00590 K02918 - ini:109147676 162.925