Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00578 ATGGGTTGGATTCCATGTTCTGGGAAATCAAACAGTAAAGCAAAGACAAAGGTGAAGGAGAAGAAGAAAATGGAAGTAAATGAGAAGCTGGTGGATCAGATCAAACCTTTTCCAGGAAAGGTGAAGATGGCTTCCTCCTCAATCTTCAAAGACACCTCTGGAAGTGGAAGGCATGATCACATTGCAGCGCAGACTTTCACATTTCGTGAGTTGGCAGCTGCAACTAGAAACTTCAGAGCGGAGTGTCTATTGGGCGAAGGGGGCTTTGGCAGAGTATACAAAGGGCACTTGGAAAGTACAAACCAGGTTGTGGCCATCAAGCAACTTGACCGAAATGGGCTGCAAGGAAATAGAGAGTTTCTTGTCGAGGTGCTAATGCTAAGTCTGCTTCACCACCCAAACCTTGTTAATCTGATTGGTTATTGTGCTGATGGAGATCAGAGGCTGTTAGTTTATGAATATATGCCACTGGGATCTCTAGAAGACCACTTGCATGATATTTCGCCAAATGAGAAAGGACTTGATTGGAATATCCGGATGAAGGTAGCAGCTGGTGCAGCAAAAGGATTGGAGTATCTACATGACAAAGCAAGTCCTCCAGTCATCTATCGAGATTTAAAGTGCTCTAATATTCTGCTCAGTGAAGGGTATCATCCAAAATTATCTGATTTTGGTCTAGCCAAACTTGGACCTGTTGGGGAAAACACTCATGTATCCACAAGGGTAATGGGCACCTATGGTTATTGTGCTCCAGAATATGCAATGACTGGTCAACTGACTCTAAAATCAGATGTTTATAGCTTTGGGGTAGTTCTTCTGGAGATCATTACAGGAAGGAAAGCCATAGACAACTCGAGAGCTGCTGGGGAGCAAAATCTCGTTGCATGGGCTAGACCCTTGTTTAAAGACCGAAGGAAGTTTTCACAAATGGCCGATCCAATGTTCAAAGGACAATATCCTCCTAGAGGCTTGTACCAGGCACTTGCTGTGGCAGCAATGTGTGTCCAGGAGCAGCCCAACATGCGGCCGGTGATAGCTGATGTTGTGACAGCCTTGACTTACCTTGCATCACAAAAATATGACCCTGATACGCACACAAACCAGAGCTCCGGCCTTGCCCCTTCCACTCCTCCCAGAACCAAAAGGGGGCAACGATATGGAGCCCCTGACTTTTAG 1176 0.4566 MGWIPCSGKSNSKAKTKVKEKKKMEVNEKLVDQIKPFPGKVKMASSSIFKDTSGSGRHDHIAAQTFTFRELAAATRNFRAECLLGEGGFGRVYKGHLESTNQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDISPNEKGLDWNIRMKVAAGAAKGLEYLHDKASPPVIYRDLKCSNILLSEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEQNLVAWARPLFKDRRKFSQMADPMFKGQYPPRGLYQALAVAAMCVQEQPNMRPVIADVVTALTYLASQKYDPDTHTNQSSGLAPSTPPRTKRGQRYGAPDF* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00578 391 FunFam Serine/threonine-protein kinase PBS1 155 370 - -
Pte13g00578 391 SMART serkin_6 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00578 391 Gene3D Transferase(Phosphotransferase) domain 1 155 372 - -
Pte13g00578 391 Pfam Protein tyrosine and serine/threonine kinase 82 351 IPR001245 GO:0004672|GO:0006468
Pte13g00578 391 MobiDBLite consensus disorder prediction 360 377 - -
Pte13g00578 391 Gene3D Phosphorylase Kinase; domain 1 51 154 - -
Pte13g00578 391 MobiDBLite consensus disorder prediction 1 21 - -
Pte13g00578 391 CDD STKc_IRAK 84 353 - -
Pte13g00578 391 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00578 391 PANTHER OS07G0668900 PROTEIN 25 364 - -
Pte13g00578 391 SUPERFAMILY Protein kinase-like (PK-like) 61 352 IPR011009 -
Pte13g00578 391 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Pte13g00578 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Pte13g00578 391 MobiDBLite consensus disorder prediction 360 391 - -
Pte13g00578 391 FunFam Serine/threonine-protein kinase PBS1 50 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00578 Pte-Chr13 4434148 4437849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00578 59 357 Glycoside Hydrolase AT3G07070 70.234 7.36e-161 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Pte13g00578 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00578 - - gmx:100818024 651.358