Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00570 ATGTCTCTGTTTGCCAATGATGATTTCCAGCATATATTGCGTTTGCTGAACACCAACGTTGATGGGAAGCAGAAAATCATGTTTGCTCTCACTTCAATCAAAGGTATTGGTCGGCAGTTTGCTAACATAGCCTGTGAGAAGGCCGATATCGACATGAACAAGAGAAAGGATTACAAGGATGGCAAGTTCTCGCAGGTGGTCTCCATTGCTTTGGAGATGAAGCTGAGAGATGATTTGGAGCGACTCAAGAAAATTAGAAACCATCGTGGGTTGAGGCACTACTGGGGCCTTCGTGTCCGTGGACAGCACACCAAGACCACTGGCCGCAGAGGAAAGACTGTCGGTGTCTCCAAGAAGCCTGAGCAACTTTGTTGCCCTTCTTTTTTGTTTAGAATTAGATGA 402 0.4602 MSLFANDDFQHILRLLNTNVDGKQKIMFALTSIKGIGRQFANIACEKADIDMNKRKDYKDGKFSQVVSIALEMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKPEQLCCPSFLFRIR* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00570 133 ProSitePatterns Ribosomal protein S13 signature. 89 102 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte13g00570 133 FunFam 40S ribosomal protein S18 60 111 - -
Pte13g00570 133 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 5 123 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte13g00570 133 Pfam Ribosomal protein S13/S18 53 110 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte13g00570 133 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 3 119 - -
Pte13g00570 133 Gene3D 30s ribosomal protein s13, domain 2 76 123 IPR027437 -
Pte13g00570 133 SUPERFAMILY S13-like H2TH domain 13 116 IPR010979 GO:0003676
Pte13g00570 133 Gene3D - 1 75 - -
Pte13g00570 133 ProSiteProfiles Ribosomal protein S13 family profile. 15 113 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00570 Pte-Chr13 4349926 4351459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00570 1 119 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 70.861 2.11e-70 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00570 K02964 - zju:107423162 204.912