Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00567 ATGGCGACAGCAGCTGCTCGCCCTCTCGTCTCAGTTCGTAACCTCGAAGGCGACATGGCTGCCGATCCAATCCAGTCCCTTTCTCTACCTGAGGTTATGAAGGCCGCCATCCGACCCGACATTGTCACTTTCGTCCACTCTAACATTTCGAAAAATAGCCGTCAACCTTACGCCGTCAGCAAACGTGCCGGTCATCAGACCTCGGCTGAATCCTGGGGTACGGGCCGTGCGGTCTCTCGTATACCCCGTGTTCCTGGGGGCGGTACCCACCGTGCTGGTCAGGGTGCTTTTGGTAACATGTGTCGTGGTGGTCGCATGTTCGCACCCACCAAGATCTGGCGCCGATGGCACCGTAAGATCAATGTCAATCAAAAGAGATATGCTGTCGTCTCCGCCATTTCTGCTTCGGCTATTCCTTCTCTCGTGATGGCTCGTGGTCATCGTGTCGAGAGTGTACCTGAAATGCCCCTGGTCATTAGTGATTCTGCTGAGAGTGTTGAGAAGACCAGGGATGCCCTCAAGATATTGAAGATAGTGGGCGCTTCTCCTGATGTTGACAAAGCTAAGGACAGCCATTCCGTCAGACCTGGTAAAGGTAAGATGAGAAACAGGCGCTATATCTCCAGGAAGGGACCCCTCATTGTTTACGGTACTGAAGGGGCCAAGATTGTGAAGGCCTTCAGGAACATTCCTGGTGTTGAGCTTGCTCACGTTGATAGACTCAATCTACTGAAGCTAGCTCCTGGCGGCCATCTTGGTAGATTTGTAATTTGGACCAAGACTGCTTTTGAGAAGCTGGATTCTATTTATGGGACATTCGACAAACCATCTGAGAAGAAGAAGGGCTACGTGCTTCCTAGGGCCAAAATGGTGAACGCTGACCTGTCCAGGATCATCAATTCTGATGAGGTCCAATCTGTTGTGAAACCAATCAAGAAGGAGGTTAGGAGAGCACCATTGAAGAAGAACCCACTGAAGAATCTCAATGCTATGTTGAAGCTGAACCCTTATGCTAAGACGGCCAAGAGGATGTCCCTGTTGGCTGAGGCACAGCGTGTCAAGGCCAAGAAGGAGAAACTTGATAAGAAGAGGGATGTCATCCCAAAGGAGGAAGCTATCAAGATCAGAGCCGCTGGCAAATCATGGTACCAGACAATGATATCAGACTCCGATTACACAGAATTTGAGAACTTTTCCAAGTGGCTCGGAGTATCCCAGTAG 1221 0.5037 MATAAARPLVSVRNLEGDMAADPIQSLSLPEVMKAAIRPDIVTFVHSNISKNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAISASAIPSLVMARGHRVESVPEMPLVISDSAESVEKTRDALKILKIVGASPDVDKAKDSHSVRPGKGKMRNRRYISRKGPLIVYGTEGAKIVKAFRNIPGVELAHVDRLNLLKLAPGGHLGRFVIWTKTAFEKLDSIYGTFDKPSEKKKGYVLPRAKMVNADLSRIINSDEVQSVVKPIKKEVRRAPLKKNPLKNLNAMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLDKKRDVIPKEEAIKIRAAGKSWYQTMISDSDYTEFENFSKWLGVSQ* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00567 406 PANTHER 60S RIBOSOMAL PROTEIN L4 5 399 IPR045240 -
Pte13g00567 406 MobiDBLite consensus disorder prediction 56 74 - -
Pte13g00567 406 Coils Coil 343 363 - -
Pte13g00567 406 ProSitePatterns Ribosomal protein L1e signature. 121 147 IPR013000 -
Pte13g00567 406 FunFam 60S ribosomal protein L4 4 309 - -
Pte13g00567 406 SUPERFAMILY Ribosomal protein L4 10 268 IPR023574 GO:0003735|GO:0005840|GO:0006412
Pte13g00567 406 Gene3D - 4 309 IPR023574 GO:0003735|GO:0005840|GO:0006412
Pte13g00567 406 Pfam 60S ribosomal protein L4 C-terminal domain 281 353 IPR025755 -
Pte13g00567 406 MobiDBLite consensus disorder prediction 56 97 - -
Pte13g00567 406 Pfam Ribosomal protein L4/L1 family 29 267 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00567 Pte-Chr13 4331446 4334011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00567 1 407 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 79.853 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00567 K02930 - qsa:O6P43_010341 701.049