Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00565 ATGGCCGAGGCTCCAGCGAGTTCTGGTGGTGGAAGTCCCGAAAGCGGTGACCAGAGTCCTCGTTCTAATGTTCGCGAGCAAGACAGGCACCTCCCAATTGCCAACATCAGTAGGATCATGAAGAGGGCCCTACCTGTTAATGGAAAAATCGCCAAAGATGCCAAGGAGACTGTGCAGGAATGCGTGTCTGAGTTTATCAGTTTCATCACTAGCGAGGCGAGCGACAAGTGTCAGAGAGAGAAGAGGAAGACGATTAATGGTGATGATTTGCTATGGGCAATGGCTACTTTAGGTTTTGAGGATTATATCGATCCCCTCAAGATTTATCTTACCAGATACAGAGAGATGGAGGTAAGTTTCATTAAATTCTTGCATTTTCTGGGTCTAGTTGCAGCTTCTGAGACTGTAATTTTACTATACGGGTATACTATATGGTCTATGACAGGGTGA 450 0.4578 MAEAPASSGGGSPESGDQSPRSNVREQDRHLPIANISRIMKRALPVNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEVSFIKFLHFLGLVAASETVILLYGYTIWSMTG* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00565 149 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Pte13g00565 149 Gene3D Histone, subunit A 17 120 IPR009072 GO:0046982
Pte13g00565 149 SUPERFAMILY Histone-fold 27 117 IPR009072 GO:0046982
Pte13g00565 149 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pte13g00565 149 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 118 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pte13g00565 149 MobiDBLite consensus disorder prediction 1 28 - -
Pte13g00565 149 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Pte13g00565 149 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Pte13g00565 149 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Pte13g00565 149 FunFam Nuclear transcription factor Y subunit B-3 19 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00565 Pte-Chr13 4315315 4317919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00565 1 117 CCAAT-HAP3 Transcription Factor Family AT2G37060 84.298 1.36e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pte13g00565 CBFD_NFYB_HMF 3.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00565 K08065 - bvg:104884304 213.001