Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00562 ATGGGGAAAACACGTGGAGCTGGAGCTGCTCGCAAGTTGAAGACCCACCGAAGGGAGGAAAGGTGGGCTGACAAGGCATACAAGAAGTCCCATCTTGGTAATGAATGGAAGAAACCTTTTGCTGGATCTTCCCATGCCAAGGGAATTGTTCTTGAAAAGATTGGTATTGAGGCGAAGCAGCCAAACTCTGCTATCCGTAAATGTGCAAGAGTACAACTTATTAAAAACGGCAAGAAGATTGCTGCATTTGTACCTAATGATGGTTGCTTAAACTACATTGAAGAAAATGACGAAGTCCTGATTGCTGGTTTTGGACGTAAGGGTCATGCTGTTGGTGATATTCCTGGAGTTCGATTCAAGGTTGTTAAGGTTTCAGGTGTCTCCCTTCTGGCATTGTTCAAGGAGAAAAAGGAGAAGCCAAGATCTTAA 429 0.4406 MGKTRGAGAARKLKTHRREERWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00562 142 CDD Ribosomal_S23 26 139 IPR005680 GO:0003735|GO:0006412|GO:0015935
Pte13g00562 142 FunFam 40S ribosomal protein S23 25 142 - -
Pte13g00562 142 Gene3D - 25 142 IPR012340 -
Pte13g00562 142 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 16 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte13g00562 142 MobiDBLite consensus disorder prediction 13 28 - -
Pte13g00562 142 Pfam Ribosomal protein S12/S23 31 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte13g00562 142 NCBIfam 30S ribosomal protein S12 7 141 IPR005680 GO:0003735|GO:0006412|GO:0015935
Pte13g00562 142 MobiDBLite consensus disorder prediction 1 28 - -
Pte13g00562 142 ProSitePatterns Ribosomal protein S12 signature. 59 66 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte13g00562 142 SUPERFAMILY Nucleic acid-binding proteins 21 140 IPR012340 -
Pte13g00562 142 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00562 Pte-Chr13 4300494 4302231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00562 1 143 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 94.406 6.71e-95 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00562 K02973 - pda:103702859 283.108