Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00556 ATGGCAGCAGACTCGTCTTTTCTGTTTGCTGGTATACATTTCGATAGAAAGAAGTTCGGCAGCGATATTGCCAGGTTCGAAAAAAAAGAAAAAGAAAATTTATCAAAAGCTTTAAGCACTTCGGAAAGTGAGATTCCAGAAAAGATTGAAGAGGGAGCATCTGTCAGAAAAAGGAAACGATTGGGAAAAGCTTCTGAAACCGTAAAGGTCGATGGATTTAGTGTTTTTAAGAAATCAAAAACAGCAGAAATTGAAGTGGATGAAGGCAACAATGGAAACAGAGCTGAAGATGGGCTTCTGAAAGAGAAGAAGGAGAGAAATAGGCAACTCGAGAGAGATGCGATATTCAGGAAGCAGCATAATATTCATGTCTCTGGGAATAATGTTCCATCCCCTCTTCAGAGTTTTGATGAACTAAAATCGAGGTATGATTGTAAATCTTATTTTGTTCGCAATCTGGAAGAGCTTGGATTCAGAGATCCAACACCAATTCAAAGGCAGGCTATTCCAGTCCTTTTATGTGGTCGTGAGTGCTTTGCATGCGCTCCAACTGGCTCTGGGAAAACCTTGGGCTTTGTCTGTCCCATGCTTATCAAGCTGAAGCAACCATCAAAAGATGGTATCCGAGCTCTTATCATCAGCCCAACCCGTGAATTATCTGCTCAGACATATAGGGAGTGCAAAAAATTGAGCAAAGGAAGTAAACTTCGAATCAAGATAATGACTAAAGAGCTTGCAAAAACTGCTAATTTTTCAAAGTCACCTTGTGATGTACTTATATCCACACCTCTTCGGTTGCGATTGGCTATCCGGGCCAAGAAGGTTGATCTTAGCAGGGTTGAGTATCTTGTATTAGATGAGTCTGATAAGTTATTTGAGCTCGGTTTATTGAAGCAAATTGATTCCATTGTGAAATCATGCTCAAATCCGGCCATAGTGAGGTCATTGTTCAGTGCTACTTTACCTGACTTTGTGGAGGAGCTGGCATGCACAATAATGCATGACGCTGTTCGGGTTATTGTTGGCAGGAAGAACATGGCTTCGGAAACAATCAAGCAAAAATTGGTTTTTACCGGAAGTGAAGAAGGAAAACTTCTAGCTCTTCGTCAGAGCTTTGCAGAGAGTCTAAATCCACCAGTACTGATCTTTGTCCAAAGCAAGGACCGAGCAAAGGAACTGTATAGTGAACTTGCATTTGAGAACATTAGAGTTGATGTCATCCATTCTGATTTATCACAGAAAGAGCGAGAAAATGCTGTTGATAACTTCCGAGCAGGCAAGACGTGGATATTGATTGCTACCGATGTTATTGCACGTGGCATGGACTTCAAGGGAGTGAACTGTGTTATCAACTATGATTTTCCAGACTCTGCTTCTGCTTACATCCACCGAATAGGTCGATCTGGTAGAGCAGGGAGGACAGGGGAAGCTATCACCTTCTACACTGAGGCGGACATTCCTTTCTTGCGAAATGTGTCTAATCTTATGGCAGCTTCAGGTTGTGAAGTTCCTGCTTGGCTCATGACCTTGCCCAAAAAGAAGTGGAAAAAGCATCGACCAAAAAGAGAGGCCATCTCTGCCAAGCCAAAGGACTAG 1596 0.4223 MAADSSFLFAGIHFDRKKFGSDIARFEKKEKENLSKALSTSESEIPEKIEEGASVRKRKRLGKASETVKVDGFSVFKKSKTAEIEVDEGNNGNRAEDGLLKEKKERNRQLERDAIFRKQHNIHVSGNNVPSPLQSFDELKSRYDCKSYFVRNLEELGFRDPTPIQRQAIPVLLCGRECFACAPTGSGKTLGFVCPMLIKLKQPSKDGIRALIISPTRELSAQTYRECKKLSKGSKLRIKIMTKELAKTANFSKSPCDVLISTPLRLRLAIRAKKVDLSRVEYLVLDESDKLFELGLLKQIDSIVKSCSNPAIVRSLFSATLPDFVEELACTIMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLALRQSFAESLNPPVLIFVQSKDRAKELYSELAFENIRVDVIHSDLSQKERENAVDNFRAGKTWILIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIGRSGRAGRTGEAITFYTEADIPFLRNVSNLMAASGCEVPAWLMTLPKKKWKKHRPKREAISAKPKD* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00556 531 Coils Coil 93 113 - -
Pte13g00556 531 Pfam Helicase conserved C-terminal domain 367 472 IPR001650 -
Pte13g00556 531 Gene3D - 347 527 IPR027417 -
Pte13g00556 531 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 112 505 - -
Pte13g00556 531 Coils Coil 24 44 - -
Pte13g00556 531 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 511 IPR001650 -
Pte13g00556 531 Gene3D - 113 346 IPR027417 -
Pte13g00556 531 SMART helicmild6 391 472 IPR001650 -
Pte13g00556 531 Pfam DEAD/DEAH box helicase 162 327 IPR011545 GO:0003676|GO:0005524
Pte13g00556 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 490 IPR027417 -
Pte13g00556 531 CDD SF2_C_DEAD 351 481 - -
Pte13g00556 531 SMART ultradead3 157 354 IPR014001 -
Pte13g00556 531 CDD DEADc_DDX52 150 342 IPR044764 GO:0003724|GO:0005524|GO:0030490
Pte13g00556 531 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 169 339 IPR014001 -
Pte13g00556 531 MobiDBLite consensus disorder prediction 35 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00556 Pte-Chr13 4261328 4265050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00556 132 504 Eukaryotic Initiation Factors Gene Family AT3G19760 32.533 1.54e-57 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00556 K14779 - qsa:O6P43_006697 867.07