LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte13g00550	ATGATTACCAATGCCACTACTGAGTTCGACTTTGGAACATTAACTTTGAGCAGTTTAAAGCTCCTTGGAGATGCCCACTTGAACAATGGCTCTGTACGGCTCACTCGGGACCTTCCTGTCCCAAACTCTGGTGCTGGCAGAGCGCTCTACTCCAGACCAGTCAGGTTCCGACAACCTGGCAATCAAGTACCTACGAGTTTCTCCACCTTCTTCTCATTTTCCGTCACTAATCTTAATCCATCATCTATTGGTGGTGGCCTCGCTTTTATAATCTCGCCGGATGATGATACCGTCGGCGATGCTGGAGGGTTCCTCGGCCTTCTTCAGGTAGAAGGTGCTACTTCTGGGGTCCTGGCGGTCGAATTTGACACCCTTATGGACGTAGAGTTTAAGGACATTAATGGGAACCATGTAGGCTTAGATTTGAATAGCATGGTTTCAACAGAAGTTGAAGACTTGGAATCCATTGGCGTTGATCTTAAAAGCGGAGAACTTGTCCACGTGTGGATCGAGTACGATGGCCTAACTCGCGGCTTCAGCATCTCTGTTTCGTACTCGAATCTAAAACCCAAGGAACCCCTTTTGTCTTTCAATCTTGATCTTGATCAATACGTGAATGATTTTATGTATGTTGGATTTTCTGGCTCAACTCAAGGAAGCACAGAGATTCACAACATTGAGTGGTGGAGTTTTAGCTCTTCTTTCGATTCAAATTCCTCTACTAGAACAGGTTCAGTGGCGGCGCCTCCTTCACCTCCGACCGCGAGTTTTATGAATCCAACTGCAAATTCATTGAAGGCTCCATCTCCTACATTGGCTCCCACAGCTTATAATTCAGCTGCCAATGCTGAACAAAAGAATAGTAAGTCTTCTTGTCATAACCAGCTCTGTAGGCAAGGTCCTGGAGCTGTTGCTGGTGTGGTTACAGGCGGAGCTTTTGTTCTGGCATTGTTTGCCGGGGCTCTCATTTGGATGTACTCTAAAAAAATCAAACTTTTGAAGAGGTCCGAATCGCTTGCATCAGATATTATCAGAATGCCAAAAGAGTTTAGCTATAAGGAACTGAAATCAGCTACCAAGTGCTTCAGTGCCAATAGGATTATCGGTCATGGTGCATTTGGAACTGTCTATAAAGGTATACTGGAAGATACAGGTGACATTGTTGCAGTGAAGAGATGCAGTCATAGTAGTCAAGGAAAAAACGAATTTTTATCTGAATTATCAATAATTGGCACTCTTAGGCATAGAAATCTTGTCAGGCTTCAAGGTTGGTGCTACGAGAAAGGTGAAATTTTGTTAGTCTATGATTTAATGCCTAATGGAAGCCTTGATAAAGCTTTATTTGAAGCAAGAACACCTTTGCCATGGCCTCATAGGCGCAAAATTTTACTAGGTGTGGCTTCTGCATTAACTTATCTGCATCAAGAATGTGAGAACCAGGTGATTCACAGAGATGTGAAGACAAGTAACATCATGTTGGATGAAGGTTTCAGTGCTCGGTTGGGAGATTTTGGTTTGGCTAGACAAACTGAGCATGATAAATCTCCTGATGCTACAGTGGCAGCTGGAACAATGGGGTACCTAGCACCAGAGTATTTGCTTACAGGGAGAGCTACAGAAAAAGCTGATGTATTCAGTTATGGAGCTGTAGTTCTTGAGGTTGCCAGTGGGAGACGACCTATTGAGAAAGACTCCATTAGAATAGAGAAAGCTGGAGTTTGCAGCAATCTAGTAGAGTGGGTTTGGAGTTTACATGGAGAAGGGAGATTGTTAGTGGCGGCTGATCCAAGGCTTGAAAATGAGTTTGAGGAGTCAGAAATGACCAGAGTGTTGCTGATTGGACTTGCTTGCTCACATCCTGATCCATTGGCTAGACCTACAATGAGGGGTGTCGCACAGATGCTGGCTGGTGAATCTGAAATCCCCATTGTCCCAAGAACAAAGCCTTCCACAAGTATAAGTACTTCCCACCTCTTACAGAGTTTGCAGGACAGTGTGTCCGACTGTAATGGGATGATAACTATGGTTACATCCTCATCAGGCTACAGCTTCAATGGCGGTGACATTGTCTGA	2073	0.4438	MITNATTEFDFGTLTLSSLKLLGDAHLNNGSVRLTRDLPVPNSGAGRALYSRPVRFRQPGNQVPTSFSTFFSFSVTNLNPSSIGGGLAFIISPDDDTVGDAGGFLGLLQVEGATSGVLAVEFDTLMDVEFKDINGNHVGLDLNSMVSTEVEDLESIGVDLKSGELVHVWIEYDGLTRGFSISVSYSNLKPKEPLLSFNLDLDQYVNDFMYVGFSGSTQGSTEIHNIEWWSFSSSFDSNSSTRTGSVAAPPSPPTASFMNPTANSLKAPSPTLAPTAYNSAANAEQKNSKSSCHNQLCRQGPGAVAGVVTGGAFVLALFAGALIWMYSKKIKLLKRSESLASDIIRMPKEFSYKELKSATKCFSANRIIGHGAFGTVYKGILEDTGDIVAVKRCSHSSQGKNEFLSELSIIGTLRHRNLVRLQGWCYEKGEILLVYDLMPNGSLDKALFEARTPLPWPHRRKILLGVASALTYLHQECENQVIHRDVKTSNIMLDEGFSARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYLLTGRATEKADVFSYGAVVLEVASGRRPIEKDSIRIEKAGVCSNLVEWVWSLHGEGRLLVAADPRLENEFEESEMTRVLLIGLACSHPDPLARPTMRGVAQMLAGESEIPIVPRTKPSTSISTSHLLQSLQDSVSDCNGMITMVTSSSGYSFNGGDIV*	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte13g00550	690	Gene3D	Transferase(Phosphotransferase) domain 1	438	656	-	-
	Pte13g00550	690	FunFam	L-type lectin-domain containing receptor kinase VIII.1	326	437	-	-
	Pte13g00550	690	SMART	serkin_6	362	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte13g00550	690	SUPERFAMILY	Concanavalin A-like lectins/glucanases	6	237	IPR013320	-
	Pte13g00550	690	ProSitePatterns	Protein kinases ATP-binding region signature.	368	391	IPR017441	GO:0005524
	Pte13g00550	690	Gene3D	-	5	248	-	-
	Pte13g00550	690	PANTHER	-	35	645	-	-
	Pte13g00550	690	FunFam	L-type lectin-domain containing receptor kinase VIII.1	438	653	-	-
	Pte13g00550	690	MobiDBLite	consensus disorder prediction	241	261	-	-
	Pte13g00550	690	CDD	STKc_IRAK	368	635	-	-
	Pte13g00550	690	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	481	493	IPR008271	GO:0004672\|GO:0006468
	Pte13g00550	690	Pfam	Legume lectin domain	8	240	IPR001220	GO:0030246
	Pte13g00550	690	CDD	lectin_legume_LecRK_Arcelin_ConA	23	229	IPR001220	GO:0030246
	Pte13g00550	690	Pfam	Protein kinase domain	364	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte13g00550	690	ProSiteProfiles	Protein kinase domain profile.	362	644	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte13g00550	690	SUPERFAMILY	Protein kinase-like (PK-like)	344	669	IPR011009	-
	Pte13g00550	690	FunFam	L-type lectin-domain containing receptor kinase VIII.1	5	245	-	-
	Pte13g00550	690	Gene3D	Phosphorylase Kinase; domain 1	325	437	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte13g00550	Pte-Chr13	4236884	4239035	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte13g00550	6	670	Receptor kinase-like Gene Family	AT3G53380	69.896	0.0	931

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Pte13g00550		Pkinase	5.6e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte13g00550	-		-	qsa:O6P43_006685	1111.67