Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00549 ATGGGGCACAGACATTTATGCAGCCCATCCGAGATGTTTGATGGCGACCATGAGCAAAATTGGAGTTACATGCAACCAAATCTACATTTTGTGCATCCAGGTAGGAACAGTAATTCAGAGAATGGCTCTATGTCTTACCCCATGGAAAATATGTCTCTAGATGAGCTTCCTGTCACTTCTAATTGGAATCATGCACCAAGGTCAAATGTTTATGGTTCATCAAGTCTCGCGGTTGATACTTCCCCACATAGGCCAGATCCATCTAGTTCTACTCGTGACCATTTTCTGCATTCATCAACAGCTGGAGCCTTCTGTCCCCTCTCTGAGAATTATCCTTTGCATGCATCATCCAACTATGACAGACAGAGTTTTCAAGTAGTCGACAGCAGTTTTGATGATCTTACAATGGGAAGTGGTAGGGCCACCCACAAACGGAAGAGTCCAGGAATTCCCCCTGTATGCGAGAGAGGCAGTACAAGTAGACACTGCAATGCTGGATCTACTCTTGAGCAACCTATGTCTTCAGAGTTGAGACAAGAGAAACAGAGTACAGATTCTCAATATTTGCCTTGGGATCAGAGTAGTGTAAATCCTCCTAATAATGGCGATGGTCTTTCAATCAGGAGTGAGGATTCTTTGAGGAATGTGAGAAGCCGTTCTGCAGTTGATTTGGAGCCCAGCCTTGCTACAACGATCCTGCCAAGTAATCATTCGCACACTTCCTATTCTACAAGTCATGTAAGTGATCAATCTGGCATAGTGGATCTTTCAAATCAAGGTTCTAGCTCTGTAACTCGTGATTGGAGCCAAATGAACATACCTCCTAGTCATGGGCGATTGTTATTTCCAGATAGATGCAGCTTTGGTCATGAAACAAATCATTTTGTCATTGGAAGCAATGCTAGTAGTACTTCCCTAGACATGGGGGCTTACCGTCATGAATTTGCTTCAAGAATTCCCAGGCTTCCTCAGAGTTTTCATGGTAATTCGACCCAATCTGTGAGAGGAGTACGAAGTCACTACTCTCACAGATCTAATCCAGCTTCTAGGGCTTCCTCAAGCATGAGAGTGGGACATGTTGTGCCTCCAGATTTTAGGTTGCATGCAATGGCTGAGAGTTACACTGCTAGGCATTCAAGGCCATTGTCCAGCTCTGGGTGGCGTGGCAGTGAGAGAAATGGGAGGTCGGGGGTAGCTAATGAGAGATATCGGTCATTGGCTGCTGCTGCCTTACATGATCGATTTTCATCCGAGGGCTTTATGATTTTTGATCGCGCCTCACTCTATGGATCTAGAAGTAGTTTTGATCAGCACAGAGACATGAGGATGGATGTAGACAACATGAGCTATGAGGAATTGCTGGCACTTGGAGAACGGATTGGGAATGTTAGCACAGGCTTGTCTGAAGACCTGATATCAAAATGTTTAACAGAAATAATATATTGTTCTTCTGAGCAAAGTCAGGATGGAGGACACTGTGTTATCTGTCTGGAAGAATACAAGGACATGGATGATGTTGGGGCGTTGAGAGCTTGTGGTCACGATTACCACTTGAGGTGCATTAGAAAGTGGTTGTCCATGAAGAATGTATGTCCCATTTGTAAAGCTTCTTTAGCTGATGATGTCATGGGAAAATAA 1638 0.4426 MGHRHLCSPSEMFDGDHEQNWSYMQPNLHFVHPGRNSNSENGSMSYPMENMSLDELPVTSNWNHAPRSNVYGSSSLAVDTSPHRPDPSSSTRDHFLHSSTAGAFCPLSENYPLHASSNYDRQSFQVVDSSFDDLTMGSGRATHKRKSPGIPPVCERGSTSRHCNAGSTLEQPMSSELRQEKQSTDSQYLPWDQSSVNPPNNGDGLSIRSEDSLRNVRSRSAVDLEPSLATTILPSNHSHTSYSTSHVSDQSGIVDLSNQGSSSVTRDWSQMNIPPSHGRLLFPDRCSFGHETNHFVIGSNASSTSLDMGAYRHEFASRIPRLPQSFHGNSTQSVRGVRSHYSHRSNPASRASSSMRVGHVVPPDFRLHAMAESYTARHSRPLSSSGWRGSERNGRSGVANERYRSLAAAALHDRFSSEGFMIFDRASLYGSRSSFDQHRDMRMDVDNMSYEELLALGERIGNVSTGLSEDLISKCLTEIIYCSSEQSQDGGHCVICLEEYKDMDDVGALRACGHDYHLRCIRKWLSMKNVCPICKASLADDVMGK* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00549 545 CDD RING-H2_RNF24-like 493 538 - -
Pte13g00549 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 458 541 IPR013083 -
Pte13g00549 545 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 458 539 - -
Pte13g00549 545 MobiDBLite consensus disorder prediction 160 208 - -
Pte13g00549 545 SUPERFAMILY RING/U-box 483 539 - -
Pte13g00549 545 ProSiteProfiles Zinc finger RING-type profile. 493 535 IPR001841 -
Pte13g00549 545 SMART ring_2 493 534 IPR001841 -
Pte13g00549 545 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 140 537 IPR045191 GO:0061630
Pte13g00549 545 MobiDBLite consensus disorder prediction 229 270 - -
Pte13g00549 545 MobiDBLite consensus disorder prediction 73 95 - -
Pte13g00549 545 MobiDBLite consensus disorder prediction 137 270 - -
Pte13g00549 545 Pfam Ring finger domain 492 535 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00549 Pte-Chr13 4225228 4231619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00549 1 542 C3H Transcription Factor Family AT2G37150 40.072 2.15e-94 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00549 - - qsa:O6P43_006681 706.827