Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00548 ATGAGCGTCTTCGATATTTTGACTAGAGTCGACGCGATCTGCAAAAAGTATGACAAATACGACATTGAAAAGCAGAAGGATCTCCATGTCTCCGGCGACGATGCATTTGCTCGGCTCTACTCCATCGTTGAAGCCGACATCGAGACCGCCCTTCAGAAAGCGGAAACTGCTTCCAACGAGAAAAATAGGGCGTCAGCGGTAGCGTTGAACGCAGAGATTCGACGAATCAAGGCTCATCTGCTTGAGGAAGTCCCCAAATTGCAGAGATTGGCCGTTAAGAGGGTAAAGGGGCTTTCCACGGAAGAGCTTACAGCTCGTAATGATTTGGTCCTTGCTTTGCCCGATAGGATCCTGGCAATTCCTGATGGCACGCCTACAGCACCAAAGCAGAAAAGAGGTTGGACTGCTTCTGCTTTAAACACTGAAATCAAATTTGATTCAGATGGGCACTTTGATGATGAATATTTTCAACAATCTGAGCAGTCAAGTCAATTTAGGCAGGAATATGAAATGCGAAAAATAAAGCAGGATCAAGGCCTGGACGTGATAGCTGAAGGACTGGATACATTGAAGAACATGGCACATGATATGAATGAGGAATTAGATAGACAAGTTCCTTTGATGGATGAGATTGACACTAAAGTGGACAAGGCAGCATCTGATCTCAAGAATACCAACGGGAGACTTAAAGATACAGTTAACCAGCTTTGA 711 0.4487 MSVFDILTRVDAICKKYDKYDIEKQKDLHVSGDDAFARLYSIVEADIETALQKAETASNEKNRASAVALNAEIRRIKAHLLEEVPKLQRLAVKRVKGLSTEELTARNDLVLALPDRILAIPDGTPTAPKQKRGWTASALNTEIKFDSDGHFDDEYFQQSEQSSQFRQEYEMRKIKQDQGLDVIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKAASDLKNTNGRLKDTVNQL* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00548 236 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Pte13g00548 236 SUPERFAMILY SNARE fusion complex 163 230 - -
Pte13g00548 236 Coils Coil 40 67 - -
Pte13g00548 236 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pte13g00548 236 CDD SNARE_Qc 175 230 - -
Pte13g00548 236 Gene3D - 170 231 - -
Pte13g00548 236 FunFam Putative syntaxin-71-like 170 231 - -
Pte13g00548 236 PANTHER SYNTAXIN 23 232 IPR045242 -
Pte13g00548 236 SMART tSNARE_6 165 232 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00548 Pte-Chr13 4220437 4224140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00548 1 236 SNARE and Associated Proteins AT3G09740 76.050 4.81e-132 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00548 K08506 - vvi:100258582 398.667