Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00544 ATGGGAAATATAGGAAGCAGTGGTGGCAATAATCGTCGGAGACAAGGTAGTCGGCGAAATCATCCACCACCCCAACCACCTGTGACGCCTCAACCGGAAATCCAAACGAATCGATATGTATTTGCCGCAGCTACGCCCTACCCATCACAATACCCGAACCCGAATGCTCCACCCTATTATCAGTATCCGGGTTATTATCAACCACCTCATCCGGCTATGCCGGTGCCTCTGCCAGCTCCCTTTGATCACCATCATAGGCCACACATAGACCCAACGCATGCGAACTGGATGGCCGGAAGGTATCCTTGTGGGCCTGTTATGACTCAGCATATACCGTATGTTGATCATCAGAAAGCGGTTACTATTAGAAATGATGTTAATCTTAAGAAGGAGACACTGAGAATTGAGCCCGATGAGGAAAATCCTGGACATTACCTCGTTGCCTTCACGTTTGACGCCACTGTCGATGGAAGCATCACTGTCTATTTCTTTGCCAAAGAAGGTGAAGGCTGCAACATTGCACCTATGAAGGAAAGCCTTCATCCACCTGTAACTGTGAATTTCGTGCAAGGTCTTGCACAGAAGTTCAAACAGCCAGCTGGAACGGGAATCGACTTTTCAATGTTTGAGGAGTCAGAGTTACTAAAAGTAAGTGAGTCGGATGTTTATCCTCTAATAGTGAAGGCTGAGGCTTGTCCAGTTAAACAGGATGGATCAGATGATGCTACAATTCCTGATGTCCCAAATTCTCAAATAACACAATCAGTGTTTGAGAAGGAGAAGGGTGAATACCATGTGAAGGTAGTGAAGCAGATTTTGTGGGTCAACAAGATGAGGTATGAGTTGCAGGAGATATATGGAATTGGAAATTCTGTAGAGAATGAAACTGATGGAAGTGATACTGGCAAAGAATGTGTGATTTGCTTGTCTGAACCTCGCGACACGACTGTTCTCCCTTGCAGACACATGTGTATGTGCAGTGGATGTGCTAAGGTATTGGGGTTACAGACAAATAGGTGTCCTATATGCAGACAACCAGTTGAAAGGCTTCTGGAAATAAAGGTCAGCAATAAGCCCGAAGAATGA 1086 0.4549 MGNIGSSGGNNRRRQGSRRNHPPPQPPVTPQPEIQTNRYVFAAATPYPSQYPNPNAPPYYQYPGYYQPPHPAMPVPLPAPFDHHHRPHIDPTHANWMAGRYPCGPVMTQHIPYVDHQKAVTIRNDVNLKKETLRIEPDEENPGHYLVAFTFDATVDGSITVYFFAKEGEGCNIAPMKESLHPPVTVNFVQGLAQKFKQPAGTGIDFSMFEESELLKVSESDVYPLIVKAEACPVKQDGSDDATIPDVPNSQITQSVFEKEKGEYHVKVVKQILWVNKMRYELQEIYGIGNSVENETDGSDTGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLGLQTNRCPICRQPVERLLEIKVSNKPEE* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00544 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 354 IPR013083 -
Pte13g00544 361 ProSiteProfiles Zinc finger RING-type profile. 305 344 IPR001841 -
Pte13g00544 361 PANTHER MAHOGUNIN 1 357 IPR045194 GO:0061630
Pte13g00544 361 Pfam Zinc finger, C3HC4 type (RING finger) 303 349 - -
Pte13g00544 361 SMART ring_2 305 343 IPR001841 -
Pte13g00544 361 CDD mRING-HC-C3HC5_MGRN1-like 303 344 IPR045195 -
Pte13g00544 361 SUPERFAMILY RING/U-box 304 350 - -
Pte13g00544 361 FunFam probable E3 ubiquitin-protein ligase LOG2 289 354 - -
Pte13g00544 361 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00544 Pte-Chr13 4187348 4191130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00544 33 324 C3H Transcription Factor Family AT3G09770 56.106 1.57e-96 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00544 - - zju:107433116 506.138