Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00543 ATGGCTTGTTCTTTGTTAGCTTGTTTCTCTTCTAAAGCAGCTGTTGATGATCAGAGCAGGCATGATGAGCAAACCAATGGGAAGTTTCGAGTGTTCTCTTACCACGAACTGAAATATGCTACTGACGATTTCCATTTCTCAAACAAGGTCGGAGAAGGCGGCTTCGGCTCTGTCTACAAGGGTCAACTCCGGGACGGCACAATGGTAGCTGTGAAAGTTCTTTCTATCGAGTTGGAATCCATGCGGGGAGAGAGGGAGTTCATAGCAGAACTAGCCTCACTCTCTGATGTCAACCATGAAAATCTAGTCACTCTCAGAGGGTGTTGTGTGGAGGCTTCGACTCGATATTTGGTCTACGATTACATGGAAAACAACAGCATTTCACACACATTGTTAGGTGGAGTGGCAAACAGGACGAAATTCACATGGGAGAGAAGGCGGAAAGTGTTAATAGGAGTTGCTCGTGGATTACTCTATCTCCATGAGGGAGTTGCTCCGCGTATTTTGCACAGGGATATTAAAGCCAGCAATATACTTCTAGATCGAAATTTTACTCCAAAAGTTTCAGATTTTGGTCTAGCTAGATTGCTTAGAGATGAAAATTCTCACATTAGCACCCGGGTAGCAGGAACATTTGGCTATCTTGCTCCAGAATACGCAGTCAGTGGTCACCTAACTCGAAAATCAGATGTATATAGCTTTGGAGTACTGATCCTAGAAGTTGTCAGTGGCCAATCAGTTGTAGATATTGACGATGAATACAAAGAATGTTTCCTAGTACAGAAGGCATGGGCGGCTCACGAGGCTGATGATCTTATTAGCCTAGTAGATTCTGTTCTTAATAAGGAATTTCCAGAGCAAGAAGCTATGAAGTTGCTAAAGCTGGGCCTACTTTGCGTGCAAGAAACCAGCAGGCTACGGCCGAAGATATCCTTGGCTTTGGAGATATTGACCAACACAGTGGATATGACAGATACTGTGATAACGAGACCTGGAATTGTTTCTGATTTTATGAAAATAAAAATGGGGCGCAGGCCTTTAGAACAACTCCAGGAATCAAGCTCCGGTGAAGTAAATTACTCAACCTTTTGGAGTTCAGCCAATGCCGGCCGTTAA 1116 0.4391 MACSLLACFSSKAAVDDQSRHDEQTNGKFRVFSYHELKYATDDFHFSNKVGEGGFGSVYKGQLRDGTMVAVKVLSIELESMRGEREFIAELASLSDVNHENLVTLRGCCVEASTRYLVYDYMENNSISHTLLGGVANRTKFTWERRRKVLIGVARGLLYLHEGVAPRILHRDIKASNILLDRNFTPKVSDFGLARLLRDENSHISTRVAGTFGYLAPEYAVSGHLTRKSDVYSFGVLILEVVSGQSVVDIDDEYKECFLVQKAWAAHEADDLISLVDSVLNKEFPEQEAMKLLKLGLLCVQETSRLRPKISLALEILTNTVDMTDTVITRPGIVSDFMKIKMGRRPLEQLQESSSGEVNYSTFWSSANAGR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00543 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Pte13g00543 371 Gene3D Phosphorylase Kinase; domain 1 14 121 - -
Pte13g00543 371 SMART serkin_6 44 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00543 371 Gene3D Transferase(Phosphotransferase) domain 1 122 329 - -
Pte13g00543 371 Pfam Protein kinase domain 44 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00543 371 CDD STKc_IRAK 50 319 - -
Pte13g00543 371 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Pte13g00543 371 FunFam Serine/threonine-protein kinase receptor 14 121 - -
Pte13g00543 371 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 14 350 - -
Pte13g00543 371 ProSiteProfiles Protein kinase domain profile. 44 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00543 371 SUPERFAMILY Protein kinase-like (PK-like) 27 331 IPR011009 -
Pte13g00543 371 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g29720 122 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00543 Pte-Chr13 4181368 4183549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00543 28 336 Receptor kinase-like Gene Family AT1G56120 49.191 1.57e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pte13g00543 Pkinase 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00543 - - qsa:O6P43_006672 503.056