Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00542 ATGGGCATGCATATCCAAATGCTCAACAGCTTTTCAGGATTCTCTCGGTCTCTAACTCTCTTTGCAGTTCTTTTAGTTGTATATTGCAATGTTGTATCCGGGTTTGGGTCGATGGGACCAATCTCGGCAGCGTTTGGTGAGGACGAGTTTTTCTGTGCCATTGATGCCAGTGGCAGGCAGGATGTTGTTTGCTGGGGAAAGAATAGTTCTTTATCATCCACTTCATCACCATCTTCCCCAAATTCAGGCTACTCCGATGAGATTCCTGCCATTGCAGCTCTCTCTGGCGGAGAAGGATTCATCTGCGGTATCCTGGCCAATACTTCACAAGCCCACTGCTGGAGCTCGACCAAACCGGGTACAGATCTTGTACCATTAATTTATCAGAACACTGCCTATTCTCAAATAGCGGCAGGCAAGAATCATGTTTGTGCTATCAGAGGATCCTATTATTCTGATCATGATTCTGGCACCATTGACTGCTGGGAAATCGTGAAAACTCGAAACAATACTCTGAGCTCAAAGGAAAGTTCTCTGTTTTATGACCCCACCATTGGCAACTTCCCGCTGAACAAGGTGGTCTCTGGAGAAGGATTTAGCTGTGGTAGTGTAAGAGAAGGAGGACTTGTTTGTTGGGGACCTAATTCCTCGATCATAGGAGCTGCAAATGTATCCGAAAATTTTGTATCTTTAGCTTCAGCAAGGAGTTCAGTTTGTGGTGTTCTGGAGATTTCTGGGGAGCTGAAATGTTGGGGTGATTCAGATTCATCAATTTCTCCGCCATCTTCAAGTCATTTTGTGTCTTTAACGGCTGGGGCTCACCATTTTTGCGGTATACATGCTGACAATCATGGGGTTTCGTGTTGGGGGAGTTTCAACTCTTCTACAGTTCCAAAGGGTCCTGGGTTTATGGCAATTGCTTCATCGGATTACACTACATGTGGTATAAGGGAAGACGATCTGTTACTCGATTGCTGGTCCGTTGATGGATCATCACCACCAATATTTGATCCACCACTGGAGTTGTGCAGTCCAGGTCTTTGTACTAGTGCTAGTTCTTGTGGCGAGGGAAACTTCGCATTCAATGCCAGCATACTCAACGAACCTGATTTGACAAGTCTTTGTGTTAGGAAAGATTTGAAAATCTGTTCCCCTTGTGGATCAAACTGTTCGGAGGGGTTCTTCTTGTCCAGTTCATGCACTGTCAATGCAGATAGAGTCTGCACTGCTTGTTCTCTTTGCCAAAATAGTTCATGCTGGGATGTCTGTAAACTTCAATCATCTCCAGAGATGCAACGGAAGCATTGGCATCATATCCTTAGAATTATTATCATTGCTGGATCTTCTACTTTGGGTTTACTCTTATTTCTGCTGGCTTGTTGCTTCTTACCACGTATTCTAGCTGTAGGAAATGAGAAGGGAGCAAAGAAGCAGTCAAAATCTTCTGTTGAGAGTGATATGAATGGGGATTCTCTTCTTTCTACGGCTGTGCTTCCTTGTCCTGGAGCAGCTCAGATTTTCAGACTAACAGAACTTAAAGATGCAACCAATGGATTTAAGGAATTTAATGAGCTCGGTAGGGGAAGTTATGGTTTTGTTTACAAAGCTATACTTGCAGATGGGAGGCTAGTTGCTGTGAAGAGGGCAAATGCTACTACTATAATTCACACAAACAACCGCGAATTCGAAATGGAGCTCGAAATTCTTTGCAATCTCAGGCATTGCAACATAGTGAACTTATTGGGGTACTCTTTGGAGATGGGAGAGAGGTTGCTAGTTTATGAGTACATGCCCCATGGGACACTTTATGACCACCTTCATGGTGGCCTTTCTCCTCTTAATTGGAATATGAGATTGAGGATTTCAATGCAGGCAGCTAAGGGACTTGAGTACCTTCACAAGGAAGTTGTGCCACCTATTGTTCACAGGGATGTCAAGTCTTCAAACATTCTTTTGGATTCCGAGTGGGGTGCAAGAATTGCAGACTTTGGACTCATTACTTCAAATGACAAGGATCCCGGCACGGACCTAGAAAGCGATGTTTACAACTTTGGAGTGGTGCTGCTAGAGATTCTAAGTGGAAGGAAAGCTTATGACAGAGATTGCATGCCTTCAGATATAGTTAACTGGGCAGTACCTTTAATGAAGCAGGGCAAAGCAGCTGCCATAATCGACAGGTCTGTAGCTCTTCCTAGGAACGTGGAACCTCTACTTAAGCTTGGGGATATAGCGGAGCTTGCTGTGAGAGAAAACCCAATTGAACGCCCAAACATATCCATTTTGGCATCTTGGTTGGAGCAAATCGCCAAAGATGGAGTCATTGTGTAG 2328 0.4429 MGMHIQMLNSFSGFSRSLTLFAVLLVVYCNVVSGFGSMGPISAAFGEDEFFCAIDASGRQDVVCWGKNSSLSSTSSPSSPNSGYSDEIPAIAALSGGEGFICGILANTSQAHCWSSTKPGTDLVPLIYQNTAYSQIAAGKNHVCAIRGSYYSDHDSGTIDCWEIVKTRNNTLSSKESSLFYDPTIGNFPLNKVVSGEGFSCGSVREGGLVCWGPNSSIIGAANVSENFVSLASARSSVCGVLEISGELKCWGDSDSSISPPSSSHFVSLTAGAHHFCGIHADNHGVSCWGSFNSSTVPKGPGFMAIASSDYTTCGIREDDLLLDCWSVDGSSPPIFDPPLELCSPGLCTSASSCGEGNFAFNASILNEPDLTSLCVRKDLKICSPCGSNCSEGFFLSSSCTVNADRVCTACSLCQNSSCWDVCKLQSSPEMQRKHWHHILRIIIIAGSSTLGLLLFLLACCFLPRILAVGNEKGAKKQSKSSVESDMNGDSLLSTAVLPCPGAAQIFRLTELKDATNGFKEFNELGRGSYGFVYKAILADGRLVAVKRANATTIIHTNNREFEMELEILCNLRHCNIVNLLGYSLEMGERLLVYEYMPHGTLYDHLHGGLSPLNWNMRLRISMQAAKGLEYLHKEVVPPIVHRDVKSSNILLDSEWGARIADFGLITSNDKDPGTDLESDVYNFGVVLLEILSGRKAYDRDCMPSDIVNWAVPLMKQGKAAAIIDRSVALPRNVEPLLKLGDIAELAVRENPIERPNISILASWLEQIAKDGVIV* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00542 775 Gene3D - 26 172 IPR009091 -
Pte13g00542 775 SMART serkin_6 519 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00542 775 Pfam Protein kinase domain 519 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00542 775 FunFam Serine/threonine-protein kinase-like protein CCR1 674 772 - -
Pte13g00542 775 Gene3D - 173 335 IPR009091 -
Pte13g00542 775 Gene3D Transferase(Phosphotransferase) domain 1 675 773 - -
Pte13g00542 775 Gene3D Transferase(Phosphotransferase) domain 1 597 674 - -
Pte13g00542 775 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524
Pte13g00542 775 SUPERFAMILY Protein kinase-like (PK-like) 502 765 IPR011009 -
Pte13g00542 775 SUPERFAMILY RCC1/BLIP-II 37 293 IPR009091 -
Pte13g00542 775 FunFam serine/threonine-protein kinase-like protein CCR1 490 596 - -
Pte13g00542 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Pte13g00542 775 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 353 408 IPR001368 GO:0005515
Pte13g00542 775 FunFam Serine/threonine-protein kinase-like protein CCR1 597 673 - -
Pte13g00542 775 ProSiteProfiles Protein kinase domain profile. 519 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00542 775 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 17 769 - -
Pte13g00542 775 Gene3D Phosphorylase Kinase; domain 1 481 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00542 Pte-Chr13 4169477 4171804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00542 23 767 Receptor kinase-like Gene Family AT3G59420 31.975 1.02e-111 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pte13g00542 Pkinase 4.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00542 - - cave:132161645 1155.58