Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00539 ATGATTACGTTTATGGATTCAAATGAGAAATTGAAAGAGGTGGAGAAGTGCTTGGATCCTCAACTATGGCATGCGTGTGCTGGAGGGATGGTGCAAATGCCACAAGTTAACGCCAAAGTTTTCTACTTTCCTCAGGGCCATGCCGAGCATGCGTCTGCGCCTGTGGATTTCAGAAGTTGCTCGAGGCTTCGACCTTATGTTTTCTGTAGGGTGTCTACTGTAAAGTACTTGGCTGATCCTGAAACTGATGAAGTTTATGCAAAAATTAGGCTAGTCCCTGTGAAGGGAAATGAACCTGATTATGAAGATGATGAAATTCATGGGCTTAATGAGTCGGACAATCAGGAAAAACCTGCTTCATTTGCTAAGACGCTGACTCAGTCTGATGCAAACAATGGAGGGGGTTTCTCTGTACCAAGATATTGTGCAGAGACAATTTTTCCTCGTTTAGACTATTCTGCAGATCCTCCTGTTCAAGCTATCCTCGCTAAGGATGTTCATGGAGAAACATGGAAATTCAGGCACATTTATCGGGGTACGCCAAGGCGACATCTTTTGACCACGGGGTGGAGTACTTTTGTGAACCACAAGAAACTTGTTGCAGGAGATTCAATTGTGTTTCTGAGGGCACAAAATGGGGACCTTTGTGTTGGAATTCGGCGAGCCAAAAGGGGAATTTCGTGTGGATCCGAGTCTCCATCAGGCTGGAACTCTGTTGGTAGAAATTGCGGTTTGCCATATGGAGGGTTTTCTTCATTTTTGAGTGAAGACGACAAACTGATAAAAAATACGAATTGCAATGGTTTAAGTTCAAATGGGGGTCCAATGGGAAGCGGCAAAGTGAAGCCTGATGCAGTTATTGAAGCTGCAAACGTTGCTGCGAAAGGACAGCCATTTGAAGTTGTTTACTACCCTCGAGCAAGTACTCCCGAGTTCTGTGTGAAGGCCTCATCGGTAAAAGCGTCATTGCAAATACGGTGGTGCTCTGGGATGAGGTTCAAAATGGCCTTTGAAACTGAGGATTCCTCACGGATAAGTTGGTTTATGGGAACCATTACTTCAGTTCAGGTTGCTGATCCCCTTCACTGGCCAGATTCACCTTGGAGGCTTCTCCAGGTTACCTGGGATGAACCAGATTTGCTTCAAAATGTGAAACGGGTAAGCCCTTGGTTGGTACAATTGGTTTCCAACATCCCTGCCATCCATCTTTCCCCTTTCTCACCTCCAAGGAAGAAGATGAGAATGCCACAGCACTCAGACTTTCCCCTGGACAGCCAATTTCCACTTCCAACATTTTCCACCAATATCTTCAGGTCCAGTAGCCCCTTTAGTTGTTTACCAAATAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCTCTACCAGATCTCCACCTCAATAGAATGCACTCAGGTTTGTATCCAACCAGTTTCCGAACACTTGATCAAGTTGCTACACCGCCTAAAGTCACGAATGGCCCAATGATTAAAAAACCAAGCATGAATGAGAATGCATCTTGGTTGCTAACAGCGGCTAGTCCTACTACTCCAAAGAAGGTTGATGATGTGAAGAGACCTCAGATTAGGCTTTTTGGTCAACCGATATTTACTGAGCAGCAGATATCTATCAGTTGCTCTTTCGAAACAGCGTCACCAGTCGGTACAGGAAACAGTTCATCTGATGGCAATGCTGAGAAGATCAGAAACTTTTCTGATGTGTCTGGGTCTGCTCTTAATCAACGAGGCCTCCAAGAACGGCCCTCTTGCAAGGGGTTCCTGTGGTACAAGGACACTCGTCAAGAAACGGAACCCAGTTTGGAGACAGGTCACTGCAAAATTTTTATGGAATCAGAAGATGTGGGGCGCACACTCGATTTGTCACTGCTTGGATCATATGAAGAACTATATAGAAAGCTAGCTGACATGTTTGATGTGGAAAAGACTGAGATGCTAAGCCACATGCTCTACTTTGATCGAACTGGGGCTGTCAAACAAATCGGTGATGAACCATTCAGCGATTTCATGAAGTCTGCCAGGAGGTTGACGATTCTGACTGATTCAAGCAGCGATAACATAGGAAAGTAA 2100 0.4524 MITFMDSNEKLKEVEKCLDPQLWHACAGGMVQMPQVNAKVFYFPQGHAEHASAPVDFRSCSRLRPYVFCRVSTVKYLADPETDEVYAKIRLVPVKGNEPDYEDDEIHGLNESDNQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQAILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAQNGDLCVGIRRAKRGISCGSESPSGWNSVGRNCGLPYGGFSSFLSEDDKLIKNTNCNGLSSNGGPMGSGKVKPDAVIEAANVAAKGQPFEVVYYPRASTPEFCVKASSVKASLQIRWCSGMRFKMAFETEDSSRISWFMGTITSVQVADPLHWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVQLVSNIPAIHLSPFSPPRKKMRMPQHSDFPLDSQFPLPTFSTNIFRSSSPFSCLPNSTPAGMQGARHAHYGLSLPDLHLNRMHSGLYPTSFRTLDQVATPPKVTNGPMIKKPSMNENASWLLTAASPTTPKKVDDVKRPQIRLFGQPIFTEQQISISCSFETASPVGTGNSSSDGNAEKIRNFSDVSGSALNQRGLQERPSCKGFLWYKDTRQETEPSLETGHCKIFMESEDVGRTLDLSLLGSYEELYRKLADMFDVEKTEMLSHMLYFDRTGAVKQIGDEPFSDFMKSARRLTILTDSSSDNIGK* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00539 699 Gene3D - 611 697 - -
Pte13g00539 699 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Pte13g00539 699 ProSiteProfiles PB1 domain profile. 613 693 IPR000270 GO:0005515
Pte13g00539 699 FunFam Auxin response factor 327 400 - -
Pte13g00539 699 MobiDBLite consensus disorder prediction 99 119 - -
Pte13g00539 699 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Pte13g00539 699 CDD B3_DNA 120 221 IPR003340 GO:0003677
Pte13g00539 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 692 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte13g00539 699 SMART B3_2 121 223 IPR003340 GO:0003677
Pte13g00539 699 Pfam Auxin response factor 289 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte13g00539 699 Gene3D - 119 223 IPR015300 -
Pte13g00539 699 SUPERFAMILY DNA-binding pseudobarrel domain 113 224 IPR015300 -
Pte13g00539 699 FunFam Auxin response factor 119 223 - -
Pte13g00539 699 Gene3D - 326 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00539 Pte-Chr13 4138930 4142660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00539 1 697 B3 DNA Binding Superfamily AT4G30080 56.601 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte13g00539 B3 5.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00539 - - tcc:18597960 1118.61