Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00536 ATGTCGACCTCTGCCGCTTCGTTAGCGTTTCCCTCTCTTAATCTCAACACAAGAACCCAATCGCTCTGCGGCACAAAGTCAGCTACCGATACTGCGCACTTCGTCTCTTGCATTTCTGCTGGGATTCGTTCTAAGCTTATTTCAATTGCTTCCTCTTCAATTTTCAATTCTGATGATAGACTGCCGTATCAGATTCAGACCCTGTCCTCTCGTTTTGTCCGAAACGTAGCCGCTTCCTCCGTATTCGACCAAGAGGAGGACGTTCTCAGCGATGATGGGGACGAACCCGATTTCCCTCCTGAACTAAAAATCTTTGTGGGTAATCTTCCTTTCAGTGTCGACAGTTCCCAGCTTGCTGGTTTATTCAAAACCGTTGGAAATGTACAGATGGTAGAGGTGATATATAACAAGACGACTGGAAGAAGCCGAGGATTTGGTTTTGTGACGATGTCGACTACGGAGGAAGTGGACGCAGCTGTTGAGATGTTCAATGGTTATGAACTCGAAGGAAGGCCATTGAGGGTGAATTCTGGACCACCTCCCCCAAAGGACAACGATGGGCCTCCGAGAATTGGCAGATTTAATTCAAGTTTCAACGATGATAACCGTCTCTATGTGGGGAACCTTTCGTGGGGTGTCGATAATTCGGTGCTGGAATCTTTTTTTAGCGAGGTAGGAGATGTTATAGAAGCCAGGGTCGTCTATGACAAGGAAAGTGGTAGATCAAGAGGATTTGGATTTGTGACCTACAGTTCTGCAGAAGCTTTCAACAAGGCCATTGAGTCCTTGGATGGTGTGGACCTTGATGGTAGACCAGTTCGGGTCTCTCAGGCAGCTCCTAGGCCAAAGAGGCAATTTTGA 861 0.4715 MSTSAASLAFPSLNLNTRTQSLCGTKSATDTAHFVSCISAGIRSKLISIASSSIFNSDDRLPYQIQTLSSRFVRNVAASSVFDQEEDVLSDDGDEPDFPPELKIFVGNLPFSVDSSQLAGLFKTVGNVQMVEVIYNKTTGRSRGFGFVTMSTTEEVDAAVEMFNGYELEGRPLRVNSGPPPPKDNDGPPRIGRFNSSFNDDNRLYVGNLSWGVDNSVLESFFSEVGDVIEARVVYDKESGRSRGFGFVTYSSAEAFNKAIESLDGVDLDGRPVRVSQAAPRPKRQF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00536 286 SUPERFAMILY RNA-binding domain, RBD 94 194 IPR035979 GO:0003676
Pte13g00536 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 174 IPR000504 GO:0003723
Pte13g00536 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 273 IPR000504 GO:0003723
Pte13g00536 286 Gene3D - 57 177 IPR012677 -
Pte13g00536 286 SUPERFAMILY RNA-binding domain, RBD 198 285 IPR035979 GO:0003676
Pte13g00536 286 CDD RRM2_NsCP33_like 203 278 - -
Pte13g00536 286 Gene3D - 178 285 IPR012677 -
Pte13g00536 286 PANTHER OS02G0815200 PROTEIN 21 281 - -
Pte13g00536 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Pte13g00536 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 280 IPR000504 GO:0003723
Pte13g00536 286 MobiDBLite consensus disorder prediction 170 194 - -
Pte13g00536 286 SMART rrm1_1 203 276 IPR000504 GO:0003723
Pte13g00536 286 SMART rrm1_1 103 176 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00536 Pte-Chr13 4115352 4118126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00536 104 285 Eukaryotic Initiation Factors Gene Family AT4G34110 31.148 1.55e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00536 - - cpap:110811207 315.849