Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00531 ATGAAGTGTTTCCCATTTTACAACGGAGAAAAGAAGGAAGAACAGAAGCGCGTGAAGTCAGGATCTGAGTTTTCTGACAATTCCGCACATGCTGATGGAGATATGAAAAGATTTGGTTCTGAATTAAATTCTCAGGATGTTTCAGATACTAGCACAGGGTCCTCAAGAAGGAATTCATATCCATCTATGTCTCAAAGATCCAGCAACCTCACAGAGTTTACTGTGTCTGAACTCAAATCAGCCACTAAAAACTTCAGCCGTACTGTTATGCTTGGAGAGGGCGGATTTGGATGTGTCTACAAGGGGTTGATAAAGAGTTCAGAAGATTCATCAACCAAGGTTGAAGTTGCTGTCAAACAACTTTCTAAAAGTGGAATGCAGGCAAGGATTTTCGTTCTCATAATGGGTCACAAGGAATGGGTGACCGAAGTGAATGTTTTGGGAGTTGTCGAGCATCCAAATCTTGTAAAACTAGTGGGATACTGTGCTGAGGATGATGAAAGAGGAATTCAACGGCTCCTTATTTATGAATATATGCCTAACAGAAGTGTAGAACACCACTTATTCTCTCGGTCGGAGATTACTCTTCCGTGGGTTAGGAGATTGCAGATAGCCCAAGATGCTGCTCGTGGTTTAACATACCTGCACGAACAGATGGACTTTCAGATCATTTTCAGGGATTTTAAATCCTCAAATATTCTACTGGATGAGCAATGGAACGCAAAACTATCAGATTTTGGTTTGGCAAGGCTGGGCCCTTCTGATGGACTAACTCATGTCTCCACAGCTGTTGTAGGAACAATGGGATATGCAGCTCCAGAATATGTGCAAACTGGACGACTCACAGCTAAGAGTGACGTGTGGAGCTATGGCGTCTTCCTTTATGAGCTCATCACTGGCAGGCGACCTCTGGATCGAAATCGTCCCAAGGGTGAACAAAAGCTCTTGGAATGGGTGAAACCATACCTATCAGATGGCAGGAAATTTCAGATAATTCTAGATCCAAGGATAGAAGCAAAACGATACCTTAGATCAGCACAAAAACTCTCTGTTGTTGCTAACCGGTGTTTGGTAAGGCAACGAAAGAATAGACCAAAGATGAGTGAAGTGTTGGAAATGGTAAATCGGATTGTAGAATCATCAGTAGATAATCCTGGAGGCTCACAACTACCTATGCATAGTTCTTTCTCAGCAGAAGCTTCACAGGATGCGGAAACAAACAACAAAAGAAGAATCATGGATGTAAAACATGGGGAAAGCAATTGGTTTGCTTGGATGTGGAGACCAAAATTATTGAGGACATGCTGA 1308 0.4243 MKCFPFYNGEKKEEQKRVKSGSEFSDNSAHADGDMKRFGSELNSQDVSDTSTGSSRRNSYPSMSQRSSNLTEFTVSELKSATKNFSRTVMLGEGGFGCVYKGLIKSSEDSSTKVEVAVKQLSKSGMQARIFVLIMGHKEWVTEVNVLGVVEHPNLVKLVGYCAEDDERGIQRLLIYEYMPNRSVEHHLFSRSEITLPWVRRLQIAQDAARGLTYLHEQMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTAKSDVWSYGVFLYELITGRRPLDRNRPKGEQKLLEWVKPYLSDGRKFQIILDPRIEAKRYLRSAQKLSVVANRCLVRQRKNRPKMSEVLEMVNRIVESSVDNPGGSQLPMHSSFSAEASQDAETNNKRRIMDVKHGESNWFAWMWRPKLLRTC* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00531 435 MobiDBLite consensus disorder prediction 1 68 - -
Pte13g00531 435 ProSitePatterns Protein kinases ATP-binding region signature. 91 119 IPR017441 GO:0005524
Pte13g00531 435 PANTHER OS01G0588500 PROTEIN-RELATED 49 376 - -
Pte13g00531 435 ProSiteProfiles Protein kinase domain profile. 85 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00531 435 CDD STKc_IRAK 91 377 - -
Pte13g00531 435 Gene3D Transferase(Phosphotransferase) domain 1 179 388 - -
Pte13g00531 435 Gene3D Phosphorylase Kinase; domain 1 45 178 - -
Pte13g00531 435 MobiDBLite consensus disorder prediction 1 39 - -
Pte13g00531 435 Pfam Protein tyrosine and serine/threonine kinase 90 372 IPR001245 GO:0004672|GO:0006468
Pte13g00531 435 FunFam Serine/threonine-protein kinase PCRK2 179 388 - -
Pte13g00531 435 MobiDBLite consensus disorder prediction 41 68 - -
Pte13g00531 435 SUPERFAMILY Protein kinase-like (PK-like) 57 374 IPR011009 -
Pte13g00531 435 FunFam Serine/threonine-protein kinase BIK1 52 178 - -
Pte13g00531 435 MobiDBLite consensus disorder prediction 382 403 - -
Pte13g00531 435 MobiDBLite consensus disorder prediction 382 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00531 Pte-Chr13 4037192 4040405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00531 1 371 Glycoside Hydrolase AT3G07070 42.287 1.30e-89 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pte13g00531 Pkinase 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00531 - - qsa:O6P43_010275 662.529