Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00525 ATGAGAAGTGTTGAGTTCAAGATTATTGAGACTGATCCTTCGGAGTACTGTGTTGTTGCCCCAGACACTGAGGTATTCTGTGAAGGAGAGCCAGTGAGAAGAGAGGATGAGGATAGATTAGATGAAATTGGTTATGATGATGTTGGTGGAGTTAGAAAGCAGATGGCTCAGATACGTGAGCTGGTAGAGCTTCCATTGAGGCATCCACAATTGTTCAAATCTATTGGAGTTAAGCCACCAAAAGGAATTCTGCTATATGGTCCTCCTGGGTCTGGCAAGACTTTAATTGCCAGAGCAGTTGCAAATGAAACTGGTGCATTTTTTTTCTGTATAAATGGTCCTGAGATAATGTCAAAATTGGCTGGGGAGAGTGAAAGTAATCTCAGGAAGGCATTTGAGGAAGCCGAGAAGAATGCACCGTCCATCATTTTCATAGACGAGATTGATTCCATTGCACCCAAGCGTGAGAAGACAAATGGAGAAGTTGAGAGGAGAATTGTCTCCCAGCTGTTGACACTTATGGATGGGCTCAAGTCCCGTGCACATGTCATTGTTATTGGTGCTACCAATCGTCCAAACAGTATTGACCCTGCTCTTAGAAGGTTTGGAAGGTTTGACCGGGAAATAGATATTGGTGTCCCAGATGAAGTTGGTCGCCTTGAGGTTCTTCGCATTCATACAAAGAACATGAAGCTTGCTGAAGATGTTGATTTAGAACGAATTGCAAAGGACACACATGGTTATGTTGGTGCTGATCTAGCTGCTTTATGTACTGAAGCTGCTCTTCAATGCATTAGGGAGAAAATGGACGTGATTGACTTGGAAGATGAGTCGATCGATGCAGAGATTCTAAACTCCATGGCAGTAACCAATGAGCATTTTCATACTGCTCTTGGTACCAGCAATCCTTCTGCTCTTCGTGAAACAGTTGTTGAAGTGCCTAATGTCAGCTGGGAAGATATTGGTGGTCTTGAAAATGTCAAGAGGGAACTTCAAGAGACCGTTCAATATCCTGTGGAGCACCCTGAGAAGTTTGAGAAGTTTGGAATGTCACCATCAAAGGGAGTTCTATTCTATGGGCCTCCTGGTTGTGGCAAAACTCTCCTGGCAAAAGCCATTGCTAATGAGTGCCAGGCTAACTTCATTAGTGTGAAAGGTCCCGAGTTACTTACAATGTGGTTTGGAGAGAGTGAGGCCAATGTCCGTGAAATTTTTGACAAGGCTCGCCAATCAGCTCCATGTGTCCTGTTTTTCGATGAACTGGATTCAATCGCAACTCAGAGAGGTAGCAGTGGTGGCGATGCTGGTGGTGCTGCTGATAGGGTTTTGAATCAACTCCTCACTGAGATGGATGGGATGTCCGCTAAAAAGACTGTGTTCATTATTGGTGCCACCAACCGGCCAGATATCATAGATGCTGCTCTCCTCAGGCCAGGTCGGCTTGACCAGCTGATCTATATTCCCCTACCAGATGAGGAATCCCGCCTTCAAATATTTAAGGCTTGCCTAAGAAAATCACCTGTATCCAAAGACGTTGACCTCAGAGCCCTTGCCAAGTACACCCAAGGCTTCAGTGGTGCTGATATTACTGAAATTTGTCAAAGGGCATGTAAATATGCCATTAGAGAGAATATTGAGAAGGACATTGAGAGGGAAAGGAGGAGAAGGGAGAATCCTGAGGCCATGGAAGAGGATGTAGAAGATGAGGTAGCAGAGATCAAGGCAGCTCATTTTGAAGAATCAATGAAATATGCACGGAGAAGTGTGAGTGATGCAGACATCCGCAAGTACCAGGCATTTGCTCAGACATTGCAGCAATCAAGGGGCTTTGGAACTGAATTCAGGTTTGCGGAGGCAAGCTCCGGTGGTGCTGCATCTGATCCATTTGCAGCTACCGGTGGTGCAGCTGATGACGATGACCTCTACAGCTAG 1932 0.4539 MRSVEFKIIETDPSEYCVVAPDTEVFCEGEPVRREDEDRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVTNEHFHTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSGGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDAALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRENPEAMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFAEASSGGAASDPFAATGGAADDDDLYS* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00525 643 CDD RecA-like_CDC48_r2-like 327 487 - -
Pte13g00525 643 FunFam Transitional endoplasmic reticulum ATPase 306 489 - -
Pte13g00525 643 Pfam AAA+ lid domain 511 551 IPR041569 -
Pte13g00525 643 Pfam AAA+ lid domain 235 277 IPR041569 -
Pte13g00525 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 304 IPR027417 -
Pte13g00525 643 ProSitePatterns AAA-protein family signature. 459 477 IPR003960 GO:0005524|GO:0016887
Pte13g00525 643 Gene3D - 493 601 - -
Pte13g00525 643 Gene3D - 48 212 IPR027417 -
Pte13g00525 643 NCBIfam CDC48 family AAA ATPase 4 605 IPR005938 GO:0016787
Pte13g00525 643 PANTHER AAA-FAMILY ATPASE 282 607 - -
Pte13g00525 643 SUPERFAMILY Cdc48 domain 2-like 1 42 IPR029067 -
Pte13g00525 643 FunFam Cell division control 48 214 305 - -
Pte13g00525 643 Gene3D - 306 489 IPR027417 -
Pte13g00525 643 Gene3D - 214 305 - -
Pte13g00525 643 SMART AAA_5 79 215 IPR003593 GO:0016887
Pte13g00525 643 SMART AAA_5 352 491 IPR003593 GO:0016887
Pte13g00525 643 CDD RecA-like_CDC48_r1-like 47 212 - -
Pte13g00525 643 Gene3D - 1 47 - -
Pte13g00525 643 MobiDBLite consensus disorder prediction 620 643 - -
Pte13g00525 643 ProSitePatterns AAA-protein family signature. 183 201 IPR003960 GO:0005524|GO:0016887
Pte13g00525 643 FunFam Transitional endoplasmic reticulum ATPase 45 212 - -
Pte13g00525 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 602 IPR027417 -
Pte13g00525 643 Pfam ATPase family associated with various cellular activities (AAA) 83 212 IPR003959 GO:0005524|GO:0016887
Pte13g00525 643 Pfam ATPase family associated with various cellular activities (AAA) 356 489 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00525 Pte-Chr13 4002906 4006120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00525 285 615 Calmodulin-binding Proteins AT3G56690 43.202 5.06e-82 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00525 K13525 - vvi:100265402 1176