Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00518 ATGAGTCACTTTGTTCCAGATTTTGAAATGGAAGAAGATGACTACTCTATTCCCACTTCTTCTGGTTCTGTCTTTCCTCGCCCAACAAAAACCTTCGCGCCGGAGGATGAGATCATGGAGTTGTTGTGGCACAATGGCCAAGTTGTAGTGCAAAGCCAAAACCAGAAGTCTGCCAAGAAAACAGGGCCTAGTTTAACACCCATGCCTCAGACTCACAGATGCACCGTCACTACTGACGCCGTGCTTCCTACAGATTCATGTGCAGTGAGAGAAATTAGATCTTCGGTAGAGCTCGAACAGCAACAACATCTGTTCATGCAAGAAGATGAGATGACTTCCTGGCTTCAATATCCAATGGTCGATGATCCTCCTTTGGATCCCAATTTTTACACCGACTTACTCTATTCATCCACTGCAGACTCCAATGATGACGGGAACAACAATATCCCTACCACCACAGTCACAACTAATACCTTATTTCCGTTTCGTTTATCTCAAAGGACGGAACTCCCGCAGTCTACGCCGACAGCAACGGCTTTACCTCCTAGGCCGCCAGTTCCGCCGATCAGAAGGACAGAGGCGGCGCCTAAGTTACAGAACTTTGCGCACTTTTCAAAACACAACGCGAAACCTCAGGTTGAACCAAGCGTAATTCTTCGTCAGCCGTCGACTTCGAAGACGGTGGTGGATTCAAGCGACACTCCAGCACTGGGGCTTTCTTCCACGATCTCAGAGATCCGGAAGGGTTATGTTGATGCCGATATTGCCCGCGGAGTGCAGAGCAGTGCCGGAGCGACCACAACAGCGACTCTAGCGGCGACGGGGACTACGACGGGCGATGGGAGGGATACGGGTACTTGTGACGTGACCGTGACGTCATCTCCTGGCGCTTCAAGTGCAAGTGCCGAGCCGAGTCAGAAACCGCCGACAGAGGATCGAAAACGGAAGGGGCGTGAACCCGAAGAGTTCGAAATTCACAGCGAGGATATCGAGTTCGAGTCTCTTGATGCCAAAAACCAACCTCGTGGTTCTACTTCTACATCTACAAAAAGGTCCCGTGCCGTTGAGGTCCACAATCTTTCAGAGAGGAGACGTCGAGATAGGATAAACGAAAAGATGAAGTCTTTACAAGAACTTATACCTCGTTGCAACAAGTCAGACAAAGCTTCAATGTTGGACGAAGCCATTGAGTACTTGAAGTCACTGCAGTTGCAAGTGCAGATGATGTCCATGGGATGTGGCGTCGTCCCAATGATGTTTCCTGGGATGCAGCAATTTATGCCTAGTATTCCAACTATGGGAATGGGAATGGGGATGGGAATGGGCATGGGCATGGGAATGGGCATGGGAATCGATATGGGAATGAATAGGCCAGTGATGCCCTTTCCTAACGTCCTAGCTACTTCAGCCATGCCTGCTCCAGCCGCCGCTACTCATCTGGGACCAAGGTATCCTATGCCTCCTTTCGCGATGCCTCTCGTTCCTTCACCTGATTCATCCAGATTGCAAGCAACAACTCAGCCTGAACCTAAGCTAACATCACTGCCCAGACCAGATCCAAATCTGCCATGGGTACCAAATTTCTCTGATCCTTATCAGCAATATCCTGGTCCCCACCAGATGCATTTGCATTTAATGCAGAATCAGGCAATGCATCAGGCGAGCACTAGCAAGCCAAGTACTAGCAAAGCTGACGAGAATCCTGAAAATCACCAGCCAGCACAATCCGGGATCCTCCTCATTTGA 1746 0.4971 MSHFVPDFEMEEDDYSIPTSSGSVFPRPTKTFAPEDEIMELLWHNGQVVVQSQNQKSAKKTGPSLTPMPQTHRCTVTTDAVLPTDSCAVREIRSSVELEQQQHLFMQEDEMTSWLQYPMVDDPPLDPNFYTDLLYSSTADSNDDGNNNIPTTTVTTNTLFPFRLSQRTELPQSTPTATALPPRPPVPPIRRTEAAPKLQNFAHFSKHNAKPQVEPSVILRQPSTSKTVVDSSDTPALGLSSTISEIRKGYVDADIARGVQSSAGATTTATLAATGTTTGDGRDTGTCDVTVTSSPGASSASAEPSQKPPTEDRKRKGREPEEFEIHSEDIEFESLDAKNQPRGSTSTSTKRSRAVEVHNLSERRRRDRINEKMKSLQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGVVPMMFPGMQQFMPSIPTMGMGMGMGMGMGMGMGMGIDMGMNRPVMPFPNVLATSAMPAPAAATHLGPRYPMPPFAMPLVPSPDSSRLQATTQPEPKLTSLPRPDPNLPWVPNFSDPYQQYPGPHQMHLHLMQNQAMHQASTSKPSTSKADENPENHQPAQSGILLI* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00518 581 Coils Coil 359 379 - -
Pte13g00518 581 MobiDBLite consensus disorder prediction 273 306 - -
Pte13g00518 581 MobiDBLite consensus disorder prediction 1 22 - -
Pte13g00518 581 FunFam Basic helix-loop-helix transcription factor 348 411 - -
Pte13g00518 581 MobiDBLite consensus disorder prediction 549 574 - -
Pte13g00518 581 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 351 419 IPR036638 GO:0046983
Pte13g00518 581 CDD bHLH_AtPIF_like 353 416 IPR047265 -
Pte13g00518 581 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 402 IPR011598 GO:0046983
Pte13g00518 581 MobiDBLite consensus disorder prediction 549 581 - -
Pte13g00518 581 Pfam Helix-loop-helix DNA-binding domain 357 403 IPR011598 GO:0046983
Pte13g00518 581 MobiDBLite consensus disorder prediction 492 522 - -
Pte13g00518 581 MobiDBLite consensus disorder prediction 498 512 - -
Pte13g00518 581 MobiDBLite consensus disorder prediction 273 359 - -
Pte13g00518 581 Gene3D - 348 411 IPR036638 GO:0046983
Pte13g00518 581 PANTHER TRANSCRIPTION FACTOR PIF3 25 559 IPR044273 GO:0003700|GO:0006355
Pte13g00518 581 SMART finulus 359 408 IPR011598 GO:0046983
Pte13g00518 581 MobiDBLite consensus disorder prediction 52 71 - -
Pte13g00518 581 MobiDBLite consensus disorder prediction 338 354 - -
Pte13g00518 581 MobiDBLite consensus disorder prediction 307 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00518 Pte-Chr13 3924225 3929597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00518 1 408 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 37.176 9.09e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte13g00518 HLH 5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00518 - - qsa:O6P43_006803 560.836