Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte13g00496 | ATGGAGTCGGATGAAGGGAAGCTATTCGTTGGAGGGGTAGCGTGGGACACAACAGAAGACAGTCTAGCTAATCATTTCAGTAAGTTCGGTGAGGTCAATGAGGCTGTTATCATGAGAGACAAGGTTACTGGACGACCTCGAGGCTTTGCTTTCGTCGTCTTCTCGGATCCTTCTGTTATCGATAGGGTTCTTCAAGAGTCTCATACCATCGATGGCCGCACGGTTGAGGCCAAAAGGGCCATGTCAAGAGAGGAACAACAATCCTCTTCTAGAGTTGGGAATTTTAGTGCTGGTAGAAATTCAGGGGAAGGAGGAAATTTCAGGACGAAAAAGATATTTGTCGGTGGGTTGCCTTCGACGCTGACAGAAGATCAATTTCTTCAATATTTTGAGAATTATGGCCGTGTAACTGATGTAGTGATAATGTATGACCAGAATACACAACGACCTCGTGGTTTTGGTTTCATAACATTTGAATCTGAAGATTCTGTTGATAGAGTTTTACACAAGACTTTTCATGACTTAGATGGTAAATCAGTAGAGGTGAAACGAGCATTACCAAAAGATGCAAATCCAGGAGGGGGTAGCCGTATGGGAGTCTATCAAGGTTTTGGTGCCTCTGGTGCCAATTCAAATACATTCGATAGTCAGATGGATAGAAATAGATACATGCAACCTCAAACCACTGGAGGTGGGTTTCCACCTTATCCTGGTTATATGACCCCAGGTTTCGGTTATGGGGCTTATGGTAGTTATGGTGTTGGTGGTTATGGAAATACAGCTAGTGGCTTTGGCAGTCCATATGGAAACCCAAATACTCCAAATGCTGCCTATGTTGGCGGAGCACCTGGTGTTTCCAAAAATGCTTGGAGCAACCAAGTGGCTTCAGGATATGGTGCTTCTGGTTATGGAGCAAATGCAAGCTACGGGTATACAGCTCCTTGGAGCATTCCTGGGGGTGTTGCTGCTGTTTCTGCACCAAGGGGTCGATCTGGATCTTCTGCCTATCCAAGTCATGGATACGGATATGGTGGTAATGAAGGGAGTGATGGCTCTTATTCTGGGGGTCATGTTGCTGGTACTGGTGGTATCAGTGGAGGGGAGCGACAAGAATTCGGCAGTGATCATGCTAGCAGTGGGTATGGTGACACCCTTGCAAAATCGGGTTACTCAGGTGAAAGCTACCCTTCACAATCAACTGATAGTTATGGTGGTGGGTTTAGTAGTTCTCAGTCAAGGAGAGCGTAA | 1248 | 0.4583 | MESDEGKLFVGGVAWDTTEDSLANHFSKFGEVNEAVIMRDKVTGRPRGFAFVVFSDPSVIDRVLQESHTIDGRTVEAKRAMSREEQQSSSRVGNFSAGRNSGEGGNFRTKKIFVGGLPSTLTEDQFLQYFENYGRVTDVVIMYDQNTQRPRGFGFITFESEDSVDRVLHKTFHDLDGKSVEVKRALPKDANPGGGSRMGVYQGFGASGANSNTFDSQMDRNRYMQPQTTGGGFPPYPGYMTPGFGYGAYGSYGVGGYGNTASGFGSPYGNPNTPNAAYVGGAPGVSKNAWSNQVASGYGASGYGANASYGYTAPWSIPGGVAAVSAPRGRSGSSAYPSHGYGYGGNEGSDGSYSGGHVAGTGGISGGERQEFGSDHASSGYGDTLAKSGYSGESYPSQSTDSYGGGFSSSQSRRA* | 416 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte13g00496 | 415 | CDD | RRM1_hnRNPA_hnRNPD_like | 8 | 78 | - | - | |
| Pte13g00496 | 415 | FunFam | heterogeneous nuclear ribonucleoprotein 1 | 104 | 217 | - | - | |
| Pte13g00496 | 415 | MobiDBLite | consensus disorder prediction | 86 | 102 | - | - | |
| Pte13g00496 | 415 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 5 | 87 | - | - | |
| Pte13g00496 | 415 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 82 | IPR000504 | GO:0003723 | |
| Pte13g00496 | 415 | MobiDBLite | consensus disorder prediction | 352 | 415 | - | - | |
| Pte13g00496 | 415 | MobiDBLite | consensus disorder prediction | 390 | 415 | - | - | |
| Pte13g00496 | 415 | Gene3D | - | 109 | 189 | IPR012677 | - | |
| Pte13g00496 | 415 | CDD | RRM2_Hrp1p | 111 | 188 | - | - | |
| Pte13g00496 | 415 | SUPERFAMILY | RNA-binding domain, RBD | 109 | 211 | IPR035979 | GO:0003676 | |
| Pte13g00496 | 415 | Gene3D | - | 1 | 92 | IPR012677 | - | |
| Pte13g00496 | 415 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 110 | 187 | IPR000504 | GO:0003723 | |
| Pte13g00496 | 415 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 75 | IPR000504 | GO:0003723 | |
| Pte13g00496 | 415 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 112 | 169 | IPR000504 | GO:0003723 | |
| Pte13g00496 | 415 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
| Pte13g00496 | 415 | SMART | rrm1_1 | 111 | 183 | IPR000504 | GO:0003723 | |
| Pte13g00496 | 415 | MobiDBLite | consensus disorder prediction | 79 | 102 | - | - | |
| Pte13g00496 | 415 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 105 | IPR035979 | GO:0003676 | |
| Pte13g00496 | 415 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 | 1 | 412 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte13g00496 | Pte-Chr13 | 3696411 | 3698390 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte13g00496 | 8 | 246 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 27.413 | 3.35e-14 | 72.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte13g00496 | K14411 | - | qsa:O6P43_010473 | 530.406 |