Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00495 ATGGCAGATTTAAGGCCTGCGCCAATAGTGGAAAGCATTGCAACTATGTACAGGAGTTTAGAATCCAGTTTCTCTGCAAAAATGTTTCAAAATACATCTTCAGCTTTTGGGAGCATTTTAGAGCCTTGCCAGTCACAGCCTAAGTCAAAAACAAGTGATAAATTTGGTAAGAATGTCAAACGTAAGTATGATGCTATGCCAATGGATGGTGATGCTGGTAACTTTCACATAATCAAGGTTGGGCTTGAACAGCACAAAGATTGTGATGTTCTGGACGTAGACTTAAACCATGTGATGCCATCGCCATGCAGTGATCAGGAAAATGGACATGGAGCAGAAAACATTTCATCAAAGGGAAGAGGTGAAGTAAATGGAGATTTAGTGGAAGAGTTGATGCAACTGAAGCCTGAGAGTTCTGGGTCTGAATCTGATTATCATATGGGAGACTCAAAGCGACAGAGAACTAATTGTGGATCCTTGCATTTGGGCTCGAGCAAGGATAGTCCTACTGTACTACGTGCTTCACATTCTAGCAATCTTGTTGCTCCCTCTTCCGAGCTGGGATTTAAGTCTGGGATGAGCTCTGGTGCATCGCAACTGGAAGTTTCAATCGAGTCTAGCTTGAACAAAAGCATCTGTTCATTTTGCCAGTCCTCTAAAGTCTCAGAGGTTACTGGGCCAATGCTACATTATGTTAATGGGACTTCAGTATCTGGAGATGCAGCAAACAAACCTAATGTCACACATGTGCATAGATTATGCATTGAATGGGCACCCAGAGTATATTTCCATGGTGAATCTATCAAGAATCTGAAAGCCGAAATCACAAGGGGTGCAAAACTTAAATGTGGCAGGTGTGGGTTGAAAGGGGCTGCTCTGGGCTGCTTTGTAAATTCCTGCAGGAGGACTTATCATGCTCCTTGTGCTACTGAAATTTCAAATTGCCGTTGGGACCTTGAAAATTTTCTTATGCTTTGCTCAGCACATTCTTCTGTCAAATTTCCGAAAGAGAAATTGAAGACCAAGCATCAAAGTCAATTTGATAGCTCGATCCCTCAACCATTAGACCTTTGGGAAACTCCAATAGATAAAGCCCAAAAATGGATTTTCTGTGGATCTGCTCTTTCCAGTGAAGAAAAGACTCTTTTAGTCGACTTTGCCCTTAGTTGTGGTGCAACTGTGACTAAATATTGGACGCCAGAAGTCACTCATGTAATTGCAGCTACAGATGCCAATGGTGCATGCATCAGGACTCTGAAGGTCTTGATGGCCATTTTGAGAGGGAAATGGGTTCTCAAAGTTGACTGGATACAAGCATGCAAAGAAGCCAAGCGTCTTGTGGATGAAGAACCCTATGAAGTTAGGCTTGACAACCATGGAAGTCTGGATGGCCCAAAAACTGGTAGACTTAGGGCTTTGGACAATGAGTCAATGATATTTGGCGGCTTGAAGTTCTATTTTGCTGGTGATTTTGTTCCATCTTACAAGGAAGATCTTAGAGAATTGGTTGTAACGGGAGGAGGTACCATTCTGGAGAGCAAAGAAGAATTGTTGTCAAAGGGCCATGACCCTACAGGGGATTCTTCGAGAATCTTGGTAGTTTACAACCTTGATCCCCCGCAAGGATGCAAGTTAGGGGAGGAAGTTGCAATTCTTTGGCAAAGATTAAATGAGGCACAAGATTTAGCTGCTAGCATTGGTTCACCAGTTGTTGGTCACACATGGCTTTTGGAATCTATTGCTTCCTGCAAGTTGCAATGTCTTGTTAGCTAA 1773 0.4275 MADLRPAPIVESIATMYRSLESSFSAKMFQNTSSAFGSILEPCQSQPKSKTSDKFGKNVKRKYDAMPMDGDAGNFHIIKVGLEQHKDCDVLDVDLNHVMPSPCSDQENGHGAENISSKGRGEVNGDLVEELMQLKPESSGSESDYHMGDSKRQRTNCGSLHLGSSKDSPTVLRASHSSNLVAPSSELGFKSGMSSGASQLEVSIESSLNKSICSFCQSSKVSEVTGPMLHYVNGTSVSGDAANKPNVTHVHRLCIEWAPRVYFHGESIKNLKAEITRGAKLKCGRCGLKGAALGCFVNSCRRTYHAPCATEISNCRWDLENFLMLCSAHSSVKFPKEKLKTKHQSQFDSSIPQPLDLWETPIDKAQKWIFCGSALSSEEKTLLVDFALSCGATVTKYWTPEVTHVIAATDANGACIRTLKVLMAILRGKWVLKVDWIQACKEAKRLVDEEPYEVRLDNHGSLDGPKTGRLRALDNESMIFGGLKFYFAGDFVPSYKEDLRELVVTGGGTILESKEELLSKGHDPTGDSSRILVVYNLDPPQGCKLGEEVAILWQRLNEAQDLAASIGSPVVGHTWLLESIASCKLQCLVS* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00495 590 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 116 587 IPR031099 GO:0006281|GO:0006974
Pte13g00495 590 SMART BRCT_7 477 583 IPR001357 -
Pte13g00495 590 SMART BRCT_7 361 444 IPR001357 -
Pte13g00495 590 ProSiteProfiles BRCT domain profile. 475 580 IPR001357 -
Pte13g00495 590 Pfam BRCA1 C Terminus (BRCT) domain 373 440 IPR001357 -
Pte13g00495 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 332 IPR013083 -
Pte13g00495 590 CDD ePHD 243 329 - -
Pte13g00495 590 SUPERFAMILY BRCT domain 479 586 IPR036420 -
Pte13g00495 590 Pfam PHD-like zinc-binding domain 251 330 - -
Pte13g00495 590 Gene3D BRCT domain 365 470 IPR036420 -
Pte13g00495 590 MobiDBLite consensus disorder prediction 152 175 - -
Pte13g00495 590 ProSiteProfiles Extended PHD (ePHD) domain profile. 210 330 IPR034732 -
Pte13g00495 590 SUPERFAMILY BRCT domain 368 460 IPR036420 -
Pte13g00495 590 FunFam Breast cancer associated RING 1 207 332 - -
Pte13g00495 590 MobiDBLite consensus disorder prediction 101 121 - -
Pte13g00495 590 CDD BRCT_Bard1_rpt1 368 447 - -
Pte13g00495 590 ProSiteProfiles BRCT domain profile. 369 454 IPR001357 -
Pte13g00495 590 FunFam Breast cancer type 1 susceptibility protein homolog 365 471 - -
Pte13g00495 590 Gene3D BRCT domain 476 590 IPR036420 -
Pte13g00495 590 MobiDBLite consensus disorder prediction 136 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00495 Pte-Chr13 3687603 3691824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00495 398 511 Core DNA Replication Machinery Family AT4G02110 33.613 1.74e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00495 K10683 - gmx:100784883 588.186