Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00481 ATGGAGGAAGACGAGGACCAAGTGTTGCTTATCAGTTTGGGCATCAAGTCCGCCAATCCTGAAGACATCGAGCGCGACGTGTTAGCTCAGGCTGGGAATGTTTCTGAAATTGGGGAGCGTGATGAAGAGGAGACTTTCAAGTTAGATACCGTTGAAGCTTCATCTACTAGCCGTGCAGAGCTTTATCATAAATTAAGGGCAGTAGAATATGAAATAGCTGCTGTTGCTTCAACTGTTGAAGAGTTAAGAGGTTCTGGGAGAAATGGAGAATGCAGTGACGGTGTTAGTGATGACAGCAGGGGAAAATGTATTCGGGATGATAAATCTTTAAATGAATTGAACCTTCAGCATGCCTTAGCTGCTGATAGACTAAGAAGCCTAAAAGCCACAAAGGCTCAAGTTGAGAAGGAGCTGCTGCATTTGTCAAAAGACAAACAAAACAGAAGAAGTGCTGTAGATAAAAAGGCAATGCTTGAAATAGTTAAGGAGGATACAAGACCTAAGAGAAAGCTCAAAGAAGTTCAGAAATCAGGTAAAGATTCTGGAAAACGTCAGAAAAGGGTCTCTTTGGATGATGATGATGATTTTGATGCAGCTTTGGATGCTGCATCTGCAGGTTTTGTTGAAACGGAGAGGGATGAATTGGTTAGGAAAGGAATATTAACTCCATTTCATAAGCTCAAGGGTTTTGAGCGCCGCTTTTGGAAACAAGGGACATCTTGTACGGAAACTGAGGGAGGAAAAGATGATCATCTTGCTTCTGCTAGTGTTGATAGAGCTGTTCAGTCGATGTCTGAGGCTGCAAGAGCACGCCCAACTACGAAGCTGCTGGAGTCTGAGGATTTGCCAAAGCTTGATGCACCCACACATCCTTTTCATCACCTCAGAAAATCTCTTAAATTATCAACTGCAGTTCCAAAAAGGAAAAAGAGCCGTCCTTTGCCTTGTCGAAAGTGGTCAGAGGGTGTTTCTGGTGAAGAAAAATGTTTGGAAGAAGGTATGAGCACAAGATCCGGCTTGGTAACTTCTAGTGATGGAAATCGAGAGACTGTGGAAGTGGAAAAAGGAAATGAATATCAACCATATATAACTATAGAAGGTGGGCTGAAAATTCCAGAGAGCATATTTGATGCTTTGTTTGACTATCAGAAGGTTGGCGTCCAATGGTTGTGGGAACTGCATTGCCAAAGAGCAGGTGGGATTATTGGGGATGAAATGGGTCTTGGTAAGACTATCCAGGTCTTATCTTTTCTTGGTGCATTGCATTTTAGTAACATGTACAAACCTAGCATCATTGTCTGCCCAGTTACACTGCTTAGACAATGGAAACGTGAAGCCCAAAAATGGTACCCAGACTTCCATGTTGAGATATTACATGATTCTGCTCGAGATTCTTCTGTGAGGAAAAAGCGGCCCACTTCTGGTGAGTTGGATTGTGATACTGATAGTTCAATGGACAGTGACTACAAGTCCAATTTGCCTTCCAGAAATGCAAAAAACTGGGAATCTCTTCTAAAGCGCATCCTAAAGTCAGAATCTGGTTTACTCGTCACCACTTACGAGCAGCTTAGGATATTAAGGGACAAGTTGCTGGAAATTGAATGGGGTTATGCAGTTTTGGATGAAGGACATAGAATTAGAAATCCAAATGCCGAAATAACAATGGTTTGTAAACAGCTACAGACAGTTCACCGCATTATTATAACTGGAGCTCCAATTCAGAATAAATTGACTGAACTGTGGTCTCTGTTTGATTTTGTTTTTCCTGGAAAGTTGGGTGTCTTACCCATATTTGAAGCAGAGTTTGCAGTTCCCATAGCAGTTGGAGGATATGCCAATGCTTCACCATTACAAGTATCCACAGCTTATAGGTGTGCTGTAGTACTGCGAGATCTAATCATGCCTTATCTTCTCCGGAGGATGAAGGTTGATGTAAATGCTCAACTTCCAAAAAAGACTGAACATGTGCTATTTTGCAGCCTTACACCTGAGCAACGATCTGCCTATAGAGCATTTCTAGCTAGCACTGAAGTGGAGCAGATTTTGGATGGAAGGAAGAATTCTCTTTATGGAATTGATTTGATGCGCAAGATTTGCAACCACCCTGATCTCCTTGAGAGGGAACATGCATTGAGTAATCCAGATTATGGAAATTTGGAACGTAGTGGGAAATTGAAGGTGGTGGCTGAAGTGCTGAAGGTCTGGAAGGAACAGGGTCATCGTGTTCTACTTTTCACACAAACGCAGCAAATGCTGGATATTGTCGAGAACTTTCTGACAACTGTTGGTTATAATTACAGGAGAATGGATGGTCTTACTCCTATTAAACAAAGGATGACCTTAATAGATGAATTCAATGACTCAACTGAGCTATTTGTCTTCATTTTAACAACCAAAGTTGGAGGTTTGGGAACAAATCTTACAGGTGCAAACAGGGTGATCATCTTTGACCCTGATTGGAACCCGTCAACTGACATGCAGCAGGCTAGGGAGCGTGCCTGGCGAATTGGTCAGAAACGAGATGTCACAGTGTATAGATTAATTACTCGGGGAACTATAGAGGAGAAGGTTTACCACCGACAGATATATAAACATTTTCTTACGAATAAGATATTGAATAATCCCCAACAAAGAAGGTTCTTTAAAGCTCGTGATATGAAAGATCTCTTCACTCTGAAAGATGATGAAGAAACTGATTCAACTGAAACTTCACATATTTTTGGTCAACTAGCTGAAGAAATGAATATTGTTGGGACACACACAGATAAGCAGGACAAACTTGATAAATTTGAAACTTCTACACCATCTGTTGAGGATGCTGGTGCTAAAAATGGCGATCCATTGGAGGAAGCACATCCTAAGAGCAAAGGGAAAGAAGATGTTGAGAACGGTGATTCAGTGGATGAAGAAACAAATATATTGAAGAGCCTTTTTGATGCCCACGGCATACATACTGGAAGAGCAAGCTTCCCCCCCCCAGGCTTGCGCACAGAGCGGCAGAAGCTTTGCGTCAGTCTCAAATGCTCCGAAGCAGAGACAGTGTCTCTGTCCCAACATGGACTGGAAAATCAGGATGTGCTGGTGCTCCCGTCATCTGTTCGCCAGAAGTTTGGTTCTACTGTGAACTCCCTGTTGATAAAAAGTAATGGAGGCAATAAATTGAATGGCTTTGCTGCTGGGGCAGCTGCTGGGAAGGCATTATCTTCAGCTGAACTACTGGCTCAAATCCGACAGAAGCAAGAAAAGGCCATTGGGGCTGGTATGGAACATCTGATGGGAACAGCCTCTGCTTCTGCTAGTCTAGGAAGATCTCTAGATTCTAGGGCTTCTCGCTTTTCATCTAGAGTACAGCCTGAGGTATTAATTCGTCAGATTTGTACCTTCTTGCAACAAATAGGTGGTACTTGCAGTTCAGCCACCATAGTTCAGCATTTCAAGGACCGGATACCCTCGGACGATCTAGCCCTGTTCAAGAATCTTCTTAAAGAAATTGCGACACTGCAAAAAGGGCCAGATGGGTCACTTTGGGTTCTGAAACCTGAGTATAAAGAATAG 3555 0.4262 MEEDEDQVLLISLGIKSANPEDIERDVLAQAGNVSEIGERDEEETFKLDTVEASSTSRAELYHKLRAVEYEIAAVASTVEELRGSGRNGECSDGVSDDSRGKCIRDDKSLNELNLQHALAADRLRSLKATKAQVEKELLHLSKDKQNRRSAVDKKAMLEIVKEDTRPKRKLKEVQKSGKDSGKRQKRVSLDDDDDFDAALDAASAGFVETERDELVRKGILTPFHKLKGFERRFWKQGTSCTETEGGKDDHLASASVDRAVQSMSEAARARPTTKLLESEDLPKLDAPTHPFHHLRKSLKLSTAVPKRKKSRPLPCRKWSEGVSGEEKCLEEGMSTRSGLVTSSDGNRETVEVEKGNEYQPYITIEGGLKIPESIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIIVCPVTLLRQWKREAQKWYPDFHVEILHDSARDSSVRKKRPTSGELDCDTDSSMDSDYKSNLPSRNAKNWESLLKRILKSESGLLVTTYEQLRILRDKLLEIEWGYAVLDEGHRIRNPNAEITMVCKQLQTVHRIIITGAPIQNKLTELWSLFDFVFPGKLGVLPIFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKVDVNAQLPKKTEHVLFCSLTPEQRSAYRAFLASTEVEQILDGRKNSLYGIDLMRKICNHPDLLEREHALSNPDYGNLERSGKLKVVAEVLKVWKEQGHRVLLFTQTQQMLDIVENFLTTVGYNYRRMDGLTPIKQRMTLIDEFNDSTELFVFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILNNPQQRRFFKARDMKDLFTLKDDEETDSTETSHIFGQLAEEMNIVGTHTDKQDKLDKFETSTPSVEDAGAKNGDPLEEAHPKSKGKEDVENGDSVDEETNILKSLFDAHGIHTGRASFPPPGLRTERQKLCVSLKCSEAETVSLSQHGLENQDVLVLPSSVRQKFGSTVNSLLIKSNGGNKLNGFAAGAAAGKALSSAELLAQIRQKQEKAIGAGMEHLMGTASASASLGRSLDSRASRFSSRVQPEVLIRQICTFLQQIGGTCSSATIVQHFKDRIPSDDLALFKNLLKEIATLQKGPDGSLWVLKPEYKE* 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00481 1184 MobiDBLite consensus disorder prediction 921 966 - -
Pte13g00481 1184 Gene3D - 646 939 IPR027417 -
Pte13g00481 1184 Pfam Helicase conserved C-terminal domain 726 837 IPR001650 -
Pte13g00481 1184 Pfam SNF2-related domain 382 704 IPR000330 GO:0005524|GO:0140658
Pte13g00481 1184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 903 IPR027417 -
Pte13g00481 1184 FunFam DNA excision repair protein ERCC-6 647 926 - -
Pte13g00481 1184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 640 IPR027417 -
Pte13g00481 1184 CDD SF2_C_SNF 722 848 - -
Pte13g00481 1184 MobiDBLite consensus disorder prediction 466 491 - -
Pte13g00481 1184 MobiDBLite consensus disorder prediction 166 190 - -
Pte13g00481 1184 Gene3D - 351 639 IPR038718 -
Pte13g00481 1184 MobiDBLite consensus disorder prediction 943 966 - -
Pte13g00481 1184 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 391 590 IPR014001 -
Pte13g00481 1184 Coils Coil 110 144 - -
Pte13g00481 1184 CDD CSB_WHD 1117 1183 - -
Pte13g00481 1184 PANTHER SNF2/RAD54 FAMILY MEMBER 160 1165 - -
Pte13g00481 1184 FunFam Protein CHROMATIN REMODELING 8 357 639 - -
Pte13g00481 1184 CDD DEXHc_ERCC6 379 589 - -
Pte13g00481 1184 SMART ultradead3 375 607 IPR014001 -
Pte13g00481 1184 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 726 887 IPR001650 -
Pte13g00481 1184 SMART helicmild6 753 837 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00481 Pte-Chr13 3576622 3581867 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00481 718 891 RAD5 or RAD16-like Gene Family AT5G22750 32.184 1.95e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte13g00481 SNF2_N 1e-62 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00481 K10841 - qsa:O6P43_010489 1549.64