Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00476 ATGGAACATGTCGTTGGTGGGAAGTTCAAACTTGGAAGAAAGATTGGGAGTGGCTCTTTTGGAGAGCTTTATTTGGGGGTTAATATACAAACAAGAGAAGAGGTTGCTGTTAAGATGGAACAATCAAAGACCAAGCATCCGCAGCTTCATTATGAGTCAAAATTGTACATGCTGCTTCAGGGAGGGACGGGAGTTCCTCATATAAAGTGGTTCGGGGTTGAAGGAGAGTATAATGTCATGGTGATTGACCTTCTTGGACCTAGTCTGGAAGATTTATTTAACTACTGCAATCGGAAGTTCACATTGAAAACAGTGTTGATGCTTGCTGATCAATTAATCAACAGAGTGGAATACATGCACTCAAGAGGTTTTCTTCATCGTGATATAAAGCCCGACAATTTTCTCATGGGCCTTGGGCGTAAAGCGAACCAGGTGTACATAATTGACTATGGTCTTGCAAAGAAGTATAGGGATCTTCAGACTCATAAGCACATACCATATAGGGAAAACAAGAATCTCACAGGAACAGCTCGCTATGCAAGTGTTAATACTCATCTTGGAATAGAACAAAGCCGAAGGGATGATCTGGAATCTCTAGGTTATGTCCTCATGTATTTTTTAAGAGGAAGCCTTCCTTGGCAGGGATTGAAAGCTGGCACAAAAAAACAGAAGTATGACAAAATAAGTGAGAAGAAGATGTCCACCCCTGTAGAGGTTCTCTGCAAATCATACCCATCAGAGTTTGCATCATACTTCCACTACTGCATATCATTGCGGTTCGAGGACAAGCCAGATTATTCTTATTTGAAGAGGCTGTTTAGAGACTTGTTCATTCGAGAAGGCTATCAGTTTGATTACGTCTTTGACTGGACTATTTTGAAATATCCTCAGATTGGTTCCAGTTCTGAAGGAAGGCTTGGCTCTGGCAAAACAGGTGCGGGTGCAGGACCATCTGCACAAAAACTAGAAAAGATCACAGTTGGCAAGGAGATCCGAGAGAAGTTCTCTGGTGCAGTTGAAGCATTTTCCAGGAGGAACAACTCAAGTTCGAGTCCACGTGGTGAACTTTCCAAACAGAGAACCTTTGATGATGTACCTGCGTCGAAGAATATGCAGCATGACACGGGCAAGGTGCGGAGTGCATCTCGGTATGGCAGCACTTCCAGAAAAGCCATGATCACATCAAGCAGGCCAAGTTCATCTGGTGATCATCATGGTGAAGGGCGTACTGGTCGCCTGATTTCAAGTGGTGGCAGGCAATTTTCTGCAAGTAGGATCCAACCTGGGTATGAGGCCAAAAATTCGTCATTGGCACGCACATCAACTGCTAGAGGAAGTCGTGACGATCCTCTTAGGAGCTTTGAGATGCTATCAATAAGGAAATAG 1386 0.4365 MEHVVGGKFKLGRKIGSGSFGELYLGVNIQTREEVAVKMEQSKTKHPQLHYESKLYMLLQGGTGVPHIKWFGVEGEYNVMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTPVEVLCKSYPSEFASYFHYCISLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSEGRLGSGKTGAGAGPSAQKLEKITVGKEIREKFSGAVEAFSRRNNSSSSPRGELSKQRTFDDVPASKNMQHDTGKVRSASRYGSTSRKAMITSSRPSSSGDHHGEGRTGRLISSGGRQFSASRIQPGYEAKNSSLARTSTARGSRDDPLRSFEMLSIRK* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00476 461 FunFam Casein kinase 1-like protein 1 330 - -
Pte13g00476 461 PANTHER CASEIN KINASE-RELATED 8 373 - -
Pte13g00476 461 CDD STKc_CK1_delta_epsilon 8 282 - -
Pte13g00476 461 MobiDBLite consensus disorder prediction 342 461 - -
Pte13g00476 461 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Pte13g00476 461 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00476 461 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00476 461 Gene3D Transferase(Phosphotransferase) domain 1 1 327 - -
Pte13g00476 461 MobiDBLite consensus disorder prediction 363 401 - -
Pte13g00476 461 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Pte13g00476 461 MobiDBLite consensus disorder prediction 445 461 - -
Pte13g00476 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Pte13g00476 461 FunFam Putative Casein kinase I 1 85 - -
Pte13g00476 461 MobiDBLite consensus disorder prediction 342 356 - -
Pte13g00476 461 MobiDBLite consensus disorder prediction 415 443 - -
Pte13g00476 461 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00476 461 MobiDBLite consensus disorder prediction 302 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00476 Pte-Chr13 3535005 3540074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00476 11 281 MAP Kinase Kinase Kinase AT1G62400 27.368 1.98e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Pte13g00476 Pkinase 2.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00476 K08960 - qsa:O6P43_010486 788.489