Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00474 ATGGAGGAAGACGAGGACCAAGTGTTGCTTATCAGTTTGGGCATCAAGTCCGCCAATCCTGAAGACATCGAGCGCGACGTGTTAGCTCAGGCTGGGAATGTTTCTGAAATTGGGGAGCGTGATGAAGAGGAGACTTTCAAGTTAGATACCGTTGAAGCTTCATCTACTAGCCGTGCAGAGCTTTATCATAAATTAAGGGCAGTAGAATATGAAATAGCTGCTGTTGCTTCAACTGTTGAAGAGTTAAGAGGTTCTGGGAGAAATGGAGAATGCAGTGACGGTGTTAGTGATGACAGCAGGGGAAAATGTATTCGGGATGATAAATCTTTAAATGAATTGAACCTTCAGCATGCCTTAGCTGCTGATAGACTAAGAAGCCTAAAAGCCACAAAGGCTCAAGTTGAGAAGGAGCTGCTGCATTTGTCAAAAGACAAACAAAACAGAAGAAGTGCTGTAGATAAAAAGGCAATACTTGAAATAGTTAAGGAGGATACAAGACCTAAGAGAAAGCTCAAAGAAGTTCATAAATCAAGTAAAAAATCTGGAAAACATCAGAAAAGGGTCTCTTTGGATGATGATGATGATTTTGATGCAGCTTTGGACGCTGCTTCTGCAGGTTTTGTTGAAACGGAAAGGGATGAATTGATTAGAAAAGGAGTATTAACTCCTTTTCATAAGCTTAAGGGTTTTGAGCGCCGCTTTCAAAAACAAGGAACACCTAGTAGGGAAACTGAGGAAGAAAAAGATGATGATCTTGCTTCTGCTAGTGTTGATAGAGCTGTTCAGTCAATATCTGAGGCTGCAAGAGCACGCCCAACTACGAAGCTGCTGGAGTCTGAGGATTTGCCAAAGCTTGATGCACCCACACATCCTTTTCATCACCTCAGAAAATCTCTTAAATTATCAACTGCAGTTCCAAAAAGGAAAAAGAGCCGTCCTTTGCCTTGTCGAAAGTGGTCAGAGGGTGTTTCTGGTGAAGAAAAATGTTTGGAAGAAGTGAGCACAAGATCCGGCTTGGTAACTTCTAGTGATGGAAATCGAGAGACTGTGGAAGTGGAAAAAGGAAATGAATATCAACCATATATAACTATAGAAGGTGGGCTGAAAATTCCAGAGAGCATATTTGATGCTTTGTTTGACTATCAGAAGGTTGGCGTCCAATGGTTGTGGGAACTGCATTGCCAAAGAGCAGGTGGGATTATTGGGGACGAAATGGGTCTTGGTAAGACTATCCAGGTCTTATCTTTTCTTGGTGCATTGCATTTTAGTAACATGTACAAACCTAGCATCATTGTCTGCCCAGTTACACTGCTTAGACAATGGAAACGTGAAGCCCAAAAATGGTACCCAGACTTCCATGTTGAGATATTACATGATTCTGCTCGAGATTCTTCTGTGAGGAAAAAGCGGCCCACTTCTGGTGAGTTGGATTGTGATACTGATAGTTCAATGGACAGTGACTACAAGTCCAATTTGCCTTCCAGAAATGCAAAAAACTGGGAATCTCTTCTAAAGCGCATCCTAAAGTCAGAATCTGGTTTACTCGTCACCACTTACGAGCAGCTTAGGATATTAAGGGACAAGTTGCTGGAAATTGAATGGGGTTATGCAGTTTTGGATGAAGGACATAGAATTAGAAATCCAAATGCCGAAATAACAATGGTTTGTAAACAGCTACAGACAGTTCACCGCATTATTATAACTGGAGCTCCAATTCAGAATAAATTGACTGAACTGTGGTCTCTGTTTGATTTTGTTTTTCCTGGAAAGTTGGGTGTCTTACCCATATTTGAAGCAGAGTTTGCAGTTCCCATAGCAGTTGGAGGATATGCCAATGCTTCACCATTACAAGTATCCACAGCTTATAGGTGTGCTGTAGTACTGCGAGATCTAATCATGCCTTATCTTCTCCGGAGGATGAAGGTTGATGTAAATGCTCAACTTCCAAAAAAGACTGAACATGTGCTATTTTGCAGCCTTACACCTGAGCAACGATCTGCCTATAGAGCATTTCTAGCTAGCACTGAAGTGGAGCAGATTTTGGATGGAAGGAAGAATTCTCTTTATGGAATTGATTTGATGCGCAAGATTTGCAACCACCCTGATCTCCTTGAGAGGGAACATGCATTGAGTAATCCAGATTATGGAAATTTGGAACGTAGTGGGAAATTGAAGGTGGTGGCTGAAGTGCTGAAGGTCTGGAAGGAACAGGGTCATCGTGTTCTACTTTTCACACAAACGCAGCAAATGCTGGATATTGTCGAGAACTTTCTGACAACTGTTGGTTATAATTACAGGAGAATGGATGGTCTTACTCCTATTAAACAAAGGATGACCTTAATAGATGAATTCAATGACTCAACTGAGCTATTTGTCTTCATTTTAACAACCAAAGTTGGAGGTTTGGGAACAAATCTTACAGGTGCAAACAGGGTGATCATCTTTGACCCTGATTGGAACCCGTCAACTGACATGCAGCAGGCTAGGGAGCGTGCCTGGCGAATTGGTCAGAAACGAGATGTCACAGTGTATAGATTAATTACTCGGGGAACTATAGAGGAGAAGGTTTACCACCGACAGATATATAAACATTTTCTTACGAATAAGATATTGAATAATCCCCAACAAAGAAGGTTCTTTAAAGCTCGTGATATGAAAGATCTCTTCACTCTGAAAGATGATGAAGAAACTGATTCAACTGAAACTTCACATATTTTTGGTCAACTAGCTGAAGAAATGAATATTGTTGGGACACACACAGATAAGCAGGACAAACTTGATAAATTTGAAACTTCTACACCATCTGTTGAGGATGCTGGTGCTAAAAATGGCGATCCATTGGAGGAAGCACATCCTAAGAGCAAAGGGAAAGAAGATGTTGAGAACGGTGATTCAGTGGATGAAGAAACAAATATATTGAAGAGCCTTTTTGATGCCCACGGCATACATAGTGCTATAAACCACGATGCCATTATGAATGCACATGATGAGGATAAATTTAGACTGGAAGAGCAAGCTTCCCAGGTTGCGCACAGAGCGGCAGAAGCTTTGCGTCAGTCTCAAATGCTCCGAAGCAGAGACAGTGTCTCTGTCCCAACATGGACTGGAAAATCAGGATGTGCTGGTGCTCCGTCATCTGTTCGCCAGAAGTTTGGTTCTACTGTGAACTCCCTGTTGATAAAAAGTAATGGAGGCAACAAATTGAATGGCTTTGCTGCTGGGGCAGCTGCTGGGAAGGCATTATCTTCAGCTGAACTACTGGCTCAAATCCGACAGAAGCAAGAAAAGGCCATTGGGGCTGGTATGGAACATCTGATGGGAACAGCCTCTGCTTCTGCTAGTCTAGGAAGATCTCTAGATTCTAGGGCTTCTCGCTTTTCATCTAGAGTACAGCCTGAGGTATTAATTCGTCAGATTTGTACCTTCTTGCAACAAATAGGTGGTACTTGCAGTTCAGCCACCATAGTTCAGCATTTCAAGGACCGGATACCCTCGGACGATCTAGCCCTGTTCAAGAATCTTCTTAAAGAAATTGCGACACTGCAAAAAGGGCCAGATGGGTCACTTTGGGTTCTGAAACCTGAGTATAAAGAATAG 3597 0.4212 MEEDEDQVLLISLGIKSANPEDIERDVLAQAGNVSEIGERDEEETFKLDTVEASSTSRAELYHKLRAVEYEIAAVASTVEELRGSGRNGECSDGVSDDSRGKCIRDDKSLNELNLQHALAADRLRSLKATKAQVEKELLHLSKDKQNRRSAVDKKAILEIVKEDTRPKRKLKEVHKSSKKSGKHQKRVSLDDDDDFDAALDAASAGFVETERDELIRKGVLTPFHKLKGFERRFQKQGTPSRETEEEKDDDLASASVDRAVQSISEAARARPTTKLLESEDLPKLDAPTHPFHHLRKSLKLSTAVPKRKKSRPLPCRKWSEGVSGEEKCLEEVSTRSGLVTSSDGNRETVEVEKGNEYQPYITIEGGLKIPESIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIIVCPVTLLRQWKREAQKWYPDFHVEILHDSARDSSVRKKRPTSGELDCDTDSSMDSDYKSNLPSRNAKNWESLLKRILKSESGLLVTTYEQLRILRDKLLEIEWGYAVLDEGHRIRNPNAEITMVCKQLQTVHRIIITGAPIQNKLTELWSLFDFVFPGKLGVLPIFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKVDVNAQLPKKTEHVLFCSLTPEQRSAYRAFLASTEVEQILDGRKNSLYGIDLMRKICNHPDLLEREHALSNPDYGNLERSGKLKVVAEVLKVWKEQGHRVLLFTQTQQMLDIVENFLTTVGYNYRRMDGLTPIKQRMTLIDEFNDSTELFVFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILNNPQQRRFFKARDMKDLFTLKDDEETDSTETSHIFGQLAEEMNIVGTHTDKQDKLDKFETSTPSVEDAGAKNGDPLEEAHPKSKGKEDVENGDSVDEETNILKSLFDAHGIHSAINHDAIMNAHDEDKFRLEEQASQVAHRAAEALRQSQMLRSRDSVSVPTWTGKSGCAGAPSSVRQKFGSTVNSLLIKSNGGNKLNGFAAGAAAGKALSSAELLAQIRQKQEKAIGAGMEHLMGTASASASLGRSLDSRASRFSSRVQPEVLIRQICTFLQQIGGTCSSATIVQHFKDRIPSDDLALFKNLLKEIATLQKGPDGSLWVLKPEYKE* 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00474 1198 Pfam Helicase conserved C-terminal domain 725 836 IPR001650 -
Pte13g00474 1198 CDD SF2_C_SNF 721 847 - -
Pte13g00474 1198 Gene3D - 645 938 IPR027417 -
Pte13g00474 1198 SMART helicmild6 752 836 IPR001650 -
Pte13g00474 1198 MobiDBLite consensus disorder prediction 231 255 - -
Pte13g00474 1198 CDD CSB_WHD 1131 1197 - -
Pte13g00474 1198 MobiDBLite consensus disorder prediction 465 490 - -
Pte13g00474 1198 MobiDBLite consensus disorder prediction 231 290 - -
Pte13g00474 1198 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 390 589 IPR014001 -
Pte13g00474 1198 FunFam Protein CHROMATIN REMODELING 8 356 638 - -
Pte13g00474 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 902 IPR027417 -
Pte13g00474 1198 Gene3D - 350 638 IPR038718 -
Pte13g00474 1198 CDD DEXHc_ERCC6 378 588 - -
Pte13g00474 1198 MobiDBLite consensus disorder prediction 920 965 - -
Pte13g00474 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 639 IPR027417 -
Pte13g00474 1198 Pfam SNF2-related domain 381 703 IPR000330 GO:0005524|GO:0140658
Pte13g00474 1198 Coils Coil 110 144 - -
Pte13g00474 1198 PANTHER SNF2/RAD54 FAMILY MEMBER 164 1179 - -
Pte13g00474 1198 SMART ultradead3 374 606 IPR014001 -
Pte13g00474 1198 MobiDBLite consensus disorder prediction 273 290 - -
Pte13g00474 1198 FunFam DNA excision repair protein ERCC-6 646 925 - -
Pte13g00474 1198 MobiDBLite consensus disorder prediction 942 965 - -
Pte13g00474 1198 MobiDBLite consensus disorder prediction 168 190 - -
Pte13g00474 1198 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 725 886 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00474 Pte-Chr13 3510563 3515801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00474 717 890 RAD5 or RAD16-like Gene Family AT5G22750 32.184 2.01e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte13g00474 SNF2_N 1.1e-62 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00474 K10841 - qsa:O6P43_010489 1652.88