Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00472 ATGTTTTGTTGGACTCAAGAGGTGGCACAGCTAAATGCAAACGAATGGTACTTCTTCAGCTTCAGAGACCGGAAATACGCAACAGGCTTTCGAACCAACCGTGCAACCATAACTGGTTATTGGAAAGCCACAGGGAAAGATCGTATCGTGTTTAACCCTATTACACGAGAAGTAGTAGGGATGAGGAAGACGTTGGTATTCTATAAGAACAGAGCTCCAAATGGCATTAAAACTGGTTGGATAATGCATGAGTTCCGCTTGGAGACCCCACATATGCCTCCCAAGGAGGACTGGGTCTTGTGTAGAGTATTTCACAAAGGCAAGGGGGACAGCAACAGTGCTAAAGTTAGCCCGGAGACAGAAAACTATTGTGCTCCATCTCTCAACTTGGCTTCTTCTTCTCCAAGCAATCAAACTGACCATCTTTCAACAGGCGCAACCAGACAAAACTATAACCAAAACTCTTTACTAAACCTCCTTCAGTTTTCAAGGGAATCCAATCATGAAGATAGCACCACCGATCAGATTAGCCCCCAACATGATGAATATGGCTTCTTATGGGATATGGATTTGGAAGAAAATAACTTGCAAAACGGAGTGGAGTCCAACTTCGGAGAAATGAGATTCTAG 630 0.4381 MFCWTQEVAQLNANEWYFFSFRDRKYATGFRTNRATITGYWKATGKDRIVFNPITREVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKGDSNSAKVSPETENYCAPSLNLASSSPSNQTDHLSTGATRQNYNQNSLLNLLQFSRESNHEDSTTDQISPQHDEYGFLWDMDLEENNLQNGVESNFGEMRF* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00472 209 ProSiteProfiles NAC domain profile. 1 106 IPR003441 GO:0003677|GO:0006355
Pte13g00472 209 Pfam No apical meristem (NAM) protein 10 87 IPR003441 GO:0003677|GO:0006355
Pte13g00472 209 MobiDBLite consensus disorder prediction 127 150 - -
Pte13g00472 209 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 167 - -
Pte13g00472 209 SUPERFAMILY NAC domain 10 106 IPR036093 GO:0003677|GO:0006355
Pte13g00472 209 Gene3D NAC domain 4 110 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00472 Pte-Chr13 3474510 3476141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00472 7 106 NAC Transcription Factor Family AT1G56010 63.551 3.60e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte13g00472 NAM 3.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00472 - - qsa:O6P43_006888 289.271