Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00456 ATGACAGGGTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTGCGAGAGGTTGTGTCTTTGCACCTTACTTTTGTCATGATCAAGGTGCTACTCACTTTGCAGCCATTCATAAGGTTTTTGGTGCAAGCAATGTATCCAAGCTTCTCTCTCACCTCCCTGTGAATGATAGATGCGAAGCTGCTCTTACCATGTCTTATGAAGCTCAAGCTAGACTCCAAGATCCAATCTATGGCTGTGTGTCTCACATCTTTGCACTCCAACAACAGGTGGTTAATCTACAGGTCCAACTAGCTCTTCTGAAGGAACAAGCAGGTCAAAGCTTTCTCCATAACTCTGTTACTCTAAACCCTAATGAACAATACATCGGAAAATCCCCTACTCAGCTACAAGATCTATATAATTGGTTTCAATCGCAAAATTCGATGGAGCCACAATTCCCTACTAACTTGTCTAATAATTGTACGAAAATGCCATACTATGGGAACGGTTCCATGGACACCTACCCATTAGGGAACTATGAAAATTCAGGGTCACTGGAACAAAGTGTCTCGTTCTCTAGCTTTGACGACAGTTCTCCTTCTATGTCCTCTTACGACATGCAAACACACGACAGGCAGTGGGCCTTCCATGAAGTAGATGACCTCCAATCTGTGGCTTTTGGGTATATTCACCGTTAA 690 0.4333 MTGSGSPCGACKFLRRKCARGCVFAPYFCHDQGATHFAAIHKVFGASNVSKLLSHLPVNDRCEAALTMSYEAQARLQDPIYGCVSHIFALQQQVVNLQVQLALLKEQAGQSFLHNSVTLNPNEQYIGKSPTQLQDLYNWFQSQNSMEPQFPTNLSNNCTKMPYYGNGSMDTYPLGNYENSGSLEQSVSFSSFDDSSPSMSSYDMQTHDRQWAFHEVDDLQSVAFGYIHR* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00456 229 Coils Coil 87 107 - -
Pte13g00456 229 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 190 - -
Pte13g00456 229 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Pte13g00456 229 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00456 Pte-Chr13 3379204 3379995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00456 7 227 AS2 family AT3G58190 53.333 1.57e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte13g00456 LOB 7.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00456 K13945 - tcc:18613179 314.309