Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00455 ATGGCATCTGGAGCTGGCAGTGGCACGACTCGCACTGGCACTGGCTCTGGCTCTCCTTGCGGGGCATGCAAGTTCCTGAGGCGAAAGTGCGCAACAAATTGTATCTTTGCGCCTTACTTTTGCTCTCAACATGGCCCTGCTCGATTTGCTGCCATCCATAAGGTGTTTGGTGCTAGTAATGTTTCCAAGTTGTTACTGCATATCCCAGCTCATGATCGCTGCGAGGCTGTTGTCACAATAGCATATGAAGCTCAAGCACGAATCAGAGACCCCGTTTATGGCTGCGTTTCTCACATCTTTGCCTTGCAACAACAGGTGGCATGCTTGCAAGCACAACTTATGCAAGTGAAGGCTCAATTGGTGCAGAACCGAGTTGGCTCCAGAAACATAGAGAACCACTGGTCTGCAAATACTGCGAGCATACCCATTAACACAGGGCATACCACTTATAATCACACGAACCCTATATCGCCTCAAAGCTCCTCTGAATCCGTTGATCACCTAATTAATGATGGAATGATTCTCAGTGCGCAAGAAATACAAAATAGGGAAGACTTCTCATTTCAACCAGTTTTGTCGAAGAAAAGACCATATAACAATGAGGTGGGTGAACTTCAAGCACTTGCTCTCAGAATGATGAGGAACTAG 648 0.4691 MASGAGSGTTRTGTGSGSPCGACKFLRRKCATNCIFAPYFCSQHGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLVQNRVGSRNIENHWSANTASIPINTGHTTYNHTNPISPQSSSESVDHLINDGMILSAQEIQNREDFSFQPVLSKKRPYNNEVGELQALALRMMRN* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00455 215 Pfam Lateral organ boundaries (LOB) domain 19 117 IPR004883 -
Pte13g00455 215 Coils Coil 99 119 - -
Pte13g00455 215 PANTHER LOB DOMAIN CONTAINING PROTEIN 15 164 - -
Pte13g00455 215 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00455 Pte-Chr13 3375018 3376118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00455 1 216 AS2 family AT2G42430 52.941 1.02e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte13g00455 LOB 1.3e-36 No_clan