Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00442 ATGGCTATCCTCAAATCATGTTTTGGATTGAAATTGAGATGTAACTCCTTTCGTACTGATCCATCCAATTGTGAAGTTGGAAGTGAATATACAAGTTGTCTTAGAATGCCTAGGCATGAAGGTGAAAAGAAAAAGAGAAAGGTTATAACTTGTAAGAATGGTGTGCTAGCAAGGAAATTTAGATGGGATGAAATGGAGAGGCTCACTGGGAATTTCACCAACAGAGTAATTGGTTCAGGGGGGTTCAGTACTGTGTATCTAGCAAATTTATCGTCCTCACAACTTTGTGCAGTTAAAGTCCATATTGGTAGCGAGCGGTTGTACCAGTTATTCAAACAAGAATTAGATGTTATGCTTCAACTTCGCCATGAAAACGTTGTCAAGCTTTTGGGCTATTGTGATGATCGAGAGGAAGGAATCATGGTACTTGAGTACGTCTCCAATGGAAATCTACACGAGAACCTTCATGGCGGGAGAAATAAGTCCGTGCTTCCATGGAGAACCCGTGTGAAAATAGCCTTCCAGCTTGCACAAGCCATAGAGTACTTGCATGAAAGCTGCAAACCCCATATCGTTCATGGTGACATGAAAGCTTCCAATGTCTTGCTGGATGAAAATCTCAATTGCAAATTGTGTGACTTTGGATCAGCTAAGGTGGGCTTTTCTTCTGCAGTGTTGCCACAATCCTCACCCACTTCCTGTTCCTCGCCGGCGAGAAAAAGACAGATGCTGGTCGGTTCAGTTGGATACACAGATCCCAGCTACATAAGAACTGGAATAGCCTCAAAGAAAAACGATATGTATAGTTATGGAGTGATTCTTCTTCAACTAGTGACTGGGGCAGAAGCCTTTTGTTCTCAAACAGGCCAACTGCTGACAAACTCCATGGCACCCCTTCTGAAAAAACTGGGTGATGGCCAAGTGAAGGCCGCGGTTGTGGAAGAAATAATGGATCCAAGTCTAACGGAAACTGGGGACTATGACATAGAACAAGTCACTGCTTTGCTTTCCATTTCAAGACTTTGTCTTCATCCATCACTTACTCAGAGACCTACTGCTTCCCATGTCGTGCAGACCCTGAGTGAAAAAATCCAGTCCAGTTACCTATTCTCTCAGACGGGCCGGGAAGAAAGATGCTATGGCGAAATGAAGGTGTAA 1158 0.4352 MAILKSCFGLKLRCNSFRTDPSNCEVGSEYTSCLRMPRHEGEKKKRKVITCKNGVLARKFRWDEMERLTGNFTNRVIGSGGFSTVYLANLSSSQLCAVKVHIGSERLYQLFKQELDVMLQLRHENVVKLLGYCDDREEGIMVLEYVSNGNLHENLHGGRNKSVLPWRTRVKIAFQLAQAIEYLHESCKPHIVHGDMKASNVLLDENLNCKLCDFGSAKVGFSSAVLPQSSPTSCSSPARKRQMLVGSVGYTDPSYIRTGIASKKNDMYSYGVILLQLVTGAEAFCSQTGQLLTNSMAPLLKKLGDGQVKAAVVEEIMDPSLTETGDYDIEQVTALLSISRLCLHPSLTQRPTASHVVQTLSEKIQSSYLFSQTGREERCYGEMKV* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00442 385 SUPERFAMILY Protein kinase-like (PK-like) 56 360 IPR011009 -
Pte13g00442 385 PANTHER OS01G0253100 PROTEIN 44 365 - -
Pte13g00442 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Pte13g00442 385 SMART serkin_6 71 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00442 385 FunFam Os07g0541700 protein 146 229 - -
Pte13g00442 385 Pfam Protein kinase domain 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00442 385 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Pte13g00442 385 Gene3D Phosphorylase Kinase; domain 1 31 145 - -
Pte13g00442 385 ProSiteProfiles Protein kinase domain profile. 71 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00442 385 Gene3D Transferase(Phosphotransferase) domain 1 146 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00442 Pte-Chr13 3227749 3229534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00442 30 366 Receptor kinase-like Gene Family AT1G33260 50.292 1.50e-116 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XIII Pte13g00442 Pkinase 2.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00442 - - cave:132174943 375.941