Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00439 ATGGAAGTTGGACTCAAGAAGGCCGAGCGCCAGATGTGTCTTGAAGAGACTGAGCTGAGGCTCGGTTTGCCTGGAAATGGAGGTGGAACTACCACCGAAGGAGACGCTGCTAGGAAGAGAGTGTTCTCAGAAACTGAGACTGACTCTGAAACCACCACTGTCGATTTGATGCTCAACCTTTCCTCCAAGGAGTCAGCTGGTGGGAAAGATCTTGACAAGGCCAAAAATTTGGCCAAGGAGAAGATGCTTCTGCCGGCTGATCCGGCTAATCCGCCAGCCAAGGCACAAGTTGTGGGTTGGCCACCCGTTCGGTCATTCCGGAAGAACATATTAGCTGCCCAGAAAAATAACAGTGAAGAAAGCGAAAAGCCAAGTGGCACTGCAACTTTTGTGAAAGTTAGCGTGGATGGTGCGCCTTACCTTCGGAAAGTGGATCTGAAGATGTACAAGAGTTACCAAGAATTCTCTGATGCCTTAGGCAAGATGTTCAGTTCCTTCACCATAGGAAATTGTGGAAACCATGGAATGAAAGATTTCATGAACGAGAGCAAGCTGATGGATCTTCTGAACAACTCCGACTACGTTCCTACCTACGAAGATAAGGATGGTGATTGGATGCTTGTCGGTGATGTTCCATGGGAGATGTTTATTGAGTCATGCAAGCGTCTGCGAATCATGAAAGGAACTGAGGCTATTGGACTTGCTCCAAGAGCAATGGAGAAATGCAAGAACAGAAGCTAG 741 0.4777 MEVGLKKAERQMCLEETELRLGLPGNGGGTTTEGDAARKRVFSETETDSETTTVDLMLNLSSKESAGGKDLDKAKNLAKEKMLLPADPANPPAKAQVVGWPPVRSFRKNILAAQKNNSEESEKPSGTATFVKVSVDGAPYLRKVDLKMYKSYQEFSDALGKMFSSFTIGNCGNHGMKDFMNESKLMDLLNNSDYVPTYEDKDGDWMLVGDVPWEMFIESCKRLRIMKGTEAIGLAPRAMEKCKNRS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00439 246 ProSiteProfiles PB1 domain profile. 128 228 IPR000270 GO:0005515
Pte13g00439 246 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 15 233 IPR003311 GO:0005634|GO:0006355
Pte13g00439 246 Gene3D - 123 240 - -
Pte13g00439 246 SUPERFAMILY CAD & PB1 domains 122 227 - -
Pte13g00439 246 MobiDBLite consensus disorder prediction 20 50 - -
Pte13g00439 246 FunFam Auxin-responsive protein 123 238 - -
Pte13g00439 246 Pfam AUX/IAA family 16 237 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00439 Pte-Chr13 3197953 3200398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00439 120 236 B3 DNA Binding Superfamily AT4G23980 30.769 3.00e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte13g00439 AUX_IAA 1.2e-84 CL0072