Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00438 ATGGACAAGACTGATTTGGGGTTGCCATATGAGTGTGATGAGCTCAACCTAGGAGATACAGAGTTAAGGTTAGGGTTGCCAGGTTGCGATGACACGAAGACACAATCATGTGTGTCTAATGTTAAGAGAAACAAGAGAGGTTTCTCAGACATAAGTGAGGAAGTGGAGGAACACTCAACGACCAAGAGCAATTCTGATAGCTGTGAGTGTGAGGCTAGAAATGTTGTATCTCCAGCCAAAACACAACTAGTGGGGTGGCCGCCAATCAGATCTTATAGGAAGAACACTCTGCAACCAAAGAAGTGTGATCAAAACAGTGATGGGACTGGACTGTTTGTCAAAGTAAGCATGGATGGAGCACCCTATCTGAGGAAGATTGGCCTTGAAGTGTACAAGAGCTACCCACAACTCCTTAAAGCTCTTCAGAATATGTTCAAATGCACATTTGGAGAATATTCAGAACGTGAAGGCTACCATGGATCTGAATATGTTCCCACATACGAAGATAAAGATGGTGACTGGATGCTGGTCGGAGATGTTCCATGGAACATGTTCATAACTTCCTGCAAAAGGCTGAGGATCATGAGAGCATCAGAAGCAAAGGGCTTGGGTTGCTTATGA 621 0.4428 MDKTDLGLPYECDELNLGDTELRLGLPGCDDTKTQSCVSNVKRNKRGFSDISEEVEEHSTTKSNSDSCECEARNVVSPAKTQLVGWPPIRSYRKNTLQPKKCDQNSDGTGLFVKVSMDGAPYLRKIGLEVYKSYPQLLKALQNMFKCTFGEYSEREGYHGSEYVPTYEDKDGDWMLVGDVPWNMFITSCKRLRIMRASEAKGLGCL* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00438 206 Gene3D - 104 206 - -
Pte13g00438 206 ProSiteProfiles PB1 domain profile. 110 199 IPR000270 GO:0005515
Pte13g00438 206 SUPERFAMILY CAD & PB1 domains 105 195 - -
Pte13g00438 206 FunFam Auxin-responsive protein 105 206 - -
Pte13g00438 206 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 15 201 IPR003311 GO:0005634|GO:0006355
Pte13g00438 206 Pfam AUX/IAA family 38 204 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00438 Pte-Chr13 3189433 3190871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00438 99 203 B3 DNA Binding Superfamily AT2G46530 35.238 8.44e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte13g00438 AUX_IAA 6.6e-60 CL0072