Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00403 ATGGCTGAACCGCTAAATAGCGGGTTTCAGATGATGCTACAGGCGGCAGTGCAATCGGTTCAATGGACGTACAGCATCTTCTGGAAGTTTTGTCACCAGCAAGGGAATCTAATTTGGGGGGATGGTTATTACAATGGAGCAATAAAGACTCGGAAAACAGTTCAACCAATGGAAGTGAGTGCCGAGGAGTCATCCTTACAGAGAAGTCATCAACTGAGAGAGTTGTATGAATCTCTGTCAGCTGGAGAGACCAACCAGCTGACAAGAAGGCCTTGCGCTGCTTTATCACCTGAGGACTTAACTGAGTCCGAGTGGTTCTACTTGATGTGTGTCTCATTCTCTTTTCCTCCGGGAACCGGATTACCAGGGAAAGCATATGCAAGTAAACAGCATGTATGGCTGGTAGGTGCAAACGAGGTCGATAGCAAAACATTCTCTAGAGCTATTCTTGCAAAGAGTGCTCACGTTCAGACTGTGGTATGCATTCCTCTATTGGACGGCGTCGTTGAAATGGGCACATTAGATAGGGTTGACGAAGACATTGCATTTATCCGACACATCAAGAGTTTCTTCATAAATCATTCTCCTCCTCAACAAAAACCAGCACTTTCCGAACACTCAACTTCCAATCCGACCACGTCATCATCGGACCACTCTCGACTCCATTCTCTTCCTATCTCAACGTTGCACAAAATGGCTGAATCTCCCGTTGGTCAACACACCAACCACCAAAGCATTGAAGAAGACGATGAGAATGATGAAGACGACGATGAAATTCAGTCTGACTCAGAAGCTCAAACAGGCAATGCTACATGTGTTGAGAAACCTAACTCAACATCCATAATTTGTGCTGAAGCAAGTGAGCTGATGCCTCTGGAGATGTCTGATCAGGATATCCGCCTGGGTTCACCAGACGGGTCAAGTCATTTGGACTCGGACTTCTATTTGCAAGAAGTGAAAGCCACACTCAACAAAGTCGCAGCCCATCAACGAACCGAGTCAACGCAGTGGCCATCAGGACAACTAGAGCCAGAACAGTTGAATAATATTGTTGGCTTTGAGCTTCGACCACCATCTACAGTCGCAATGCCACCCTCATCGTCAGCATTAGAAGAAATATTGACACGAGACGGCACGCATTATTCCCAAACAGTCGCCACCATTCTTCGAAACCAGTCAAGTAGGTGGGTTCACTCATCTTCCTCTGGCGCAGCCACTTCTTCCATGAAATCGTCATTTACCAATTGGACTCCAAACAAAGAACCCCATTTGCGTGGTGCCTCTGGTAAGGGCACCTCGCAATGGCTCCTCAAGCACATCTTGTTCAGTGTGCCACTCCTACATACCAAACATTCTGATGATAACTCGTTTGAGTCCCGTGATGGCAGTGAAAGCACCACCAGGTTGCGCAAGGTGACCCCACAAGATGAGCTCAGTGCCAACCACGTCCTTGCCGAGCGCCGTCGCCGCGAAAAGCTTAATGAAAGATTTATCTTGCTAAGGTCACTGGTGCCCTTCGTGACTAAAATGGACAAGGCATCCATATTAGGGGACACCATAGAGTACTTGAAACAATTACGCAGAAGGATTGAGGAGCTTGAGGCTCTTCATCAACAAATGGAAATTGATCAAAGATTCAGGGCTGCAGAGCCACACAAAAATATGAGTAATTCAAAGGAAAGGAGTGGGATCACTGTTTCAGAACGGGCGAGGAATCGTCCATCTCTATCAGATAAGAGGAAGATGAGGATTGTGGAAGAAATTGGGGGCACCGCCACAATGAAGTCCAGGGCAGTAGATGTATCATCGCGAGCACTGGATGAGGAGAATGGCACACTGGTGCAGGTTTCAATTATAGAAAGTGACGCATTGTTGGAGCTGCAATGCCAACATAGAGAAGGGGTGTTACTTGATATCATGCAAATCCTTCGAGAGCTTCAGATTGAGGTTACGTCAGTGCAGTCTTCAGTGAACAATGGGATACTTGTGGCGGAGTTGAGGGCTAAGGTTAAAGAAATTGCCATCGGGAAAAAGGCAAGCATTGTGGAGGTGAGAAAAGCCGTGAATCAAATCATACCTCACAATGACTGA 2091 0.4677 MAEPLNSGFQMMLQAAVQSVQWTYSIFWKFCHQQGNLIWGDGYYNGAIKTRKTVQPMEVSAEESSLQRSHQLRELYESLSAGETNQLTRRPCAALSPEDLTESEWFYLMCVSFSFPPGTGLPGKAYASKQHVWLVGANEVDSKTFSRAILAKSAHVQTVVCIPLLDGVVEMGTLDRVDEDIAFIRHIKSFFINHSPPQQKPALSEHSTSNPTTSSSDHSRLHSLPISTLHKMAESPVGQHTNHQSIEEDDENDEDDDEIQSDSEAQTGNATCVEKPNSTSIICAEASELMPLEMSDQDIRLGSPDGSSHLDSDFYLQEVKATLNKVAAHQRTESTQWPSGQLEPEQLNNIVGFELRPPSTVAMPPSSSALEEILTRDGTHYSQTVATILRNQSSRWVHSSSSGAATSSMKSSFTNWTPNKEPHLRGASGKGTSQWLLKHILFSVPLLHTKHSDDNSFESRDGSESTTRLRKVTPQDELSANHVLAERRRREKLNERFILLRSLVPFVTKMDKASILGDTIEYLKQLRRRIEELEALHQQMEIDQRFRAAEPHKNMSNSKERSGITVSERARNRPSLSDKRKMRIVEEIGGTATMKSRAVDVSSRALDEENGTLVQVSIIESDALLELQCQHREGVLLDIMQILRELQIEVTSVQSSVNNGILVAELRAKVKEIAIGKKASIVEVRKAVNQIIPHND* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00403 696 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 477 526 IPR011598 GO:0046983
Pte13g00403 696 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 479 545 IPR036638 GO:0046983
Pte13g00403 696 MobiDBLite consensus disorder prediction 452 473 - -
Pte13g00403 696 MobiDBLite consensus disorder prediction 195 220 - -
Pte13g00403 696 PANTHER TRANSCRIPTION FACTOR TT8 6 694 - -
Pte13g00403 696 MobiDBLite consensus disorder prediction 452 471 - -
Pte13g00403 696 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 191 IPR025610 -
Pte13g00403 696 Gene3D - 470 543 IPR036638 GO:0046983
Pte13g00403 696 MobiDBLite consensus disorder prediction 248 262 - -
Pte13g00403 696 Coils Coil 516 543 - -
Pte13g00403 696 MobiDBLite consensus disorder prediction 550 576 - -
Pte13g00403 696 Pfam Helix-loop-helix DNA-binding domain 480 527 IPR011598 GO:0046983
Pte13g00403 696 SMART finulus 483 532 IPR011598 GO:0046983
Pte13g00403 696 MobiDBLite consensus disorder prediction 399 428 - -
Pte13g00403 696 MobiDBLite consensus disorder prediction 234 274 - -
Pte13g00403 696 MobiDBLite consensus disorder prediction 399 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00403 Pte-Chr13 2876178 2881407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00403 374 695 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 38.509 8.01e-56 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte13g00403 bHLH-MYC_N 1.1e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00403 - - qsa:O6P43_007050 764.607