Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00396 ATGGCCAGTCGCCAGCTCAGCCACTGCGGCATCACTCACGTGACATTCACACCACCTCTCGAGTACGTACCTCTGTACGTACTAAGTAGTATGCTGTATGCACAAAGTGAAAGGACGAAAGCGAAAGGTAAGAGTCAGAGGACTTGTGAAACTATGAAAATGGAAGGACAAAGCAGTTCATCAGGATTTCCACTGCAACTTATCCCATGTAGTACTGGTGCAACTGGAGCAACCGATGTCTCTCATATAGCTGAGGGAGTTCAGAACACACATTCATTCATGTATTGGAGGGACAAAAATCATTGGAATAGCCCACTGCAGTCATCTCCAACTTATGTTCAATATCTATCTGAAAACACTGCATATCTTCCCAAGTCTAACACTGATGAGGATATGCTTGGAAGAAATTGTCCACTTCCTGATAGCATGGATCCTACAAATGGGGTTAACGAAATGCACAGGAACTTATATTACAATGAAATGGGAAAAGCGGTGAAAATGGAACCCGGAGATTCTGCCATTTTCGTAGATGCTAAGAAGCTAGGGCAAAGTTGGAAGCCAGATATTTTATATGGACAAGCAAATAAGTCTCGTCAAGTCTTTGACAGGAAGCATGTTCTGTGTGCACCAGAATCAGGAGGACTTAATCATGTGATTTCACGAGTTCATCAAAGCATACAAATTCCTGCAACTGGTTCCCCTTCGCAACCGAAACAAACTTTAACAAGAAAGGTGCTTCCAAATGACAGAGAACGTCGGATACGACTCTCGGAGAAGCTCAATGCGTTGCAAGAATTGCTTCCACGCGCCTCAGAGGGTTGTCAAGCAAATGTAGTTGATGATATCATTGACCATGTCAAATATTTGCTGCTTCAAATAAAAGAGTTAAGTCGAAGCAGGCTTCAAAGTGAACCAACTGCTACACATCTCATCTACCGCGAGGGATATGGGCATTTCATTGACAACCAGATGTTTAATGAGCCACTGGAAGAGATGATTGGCAAGCTTTTGGAGGATCAAGAGGCCGCTGCTGATTTTTTGGAGAGGAAAGGCCTCTTCTTGCTGCCCATGGCTTATGCTGAAGACATACCACGTGCTTTATGA 1104 0.4375 MASRQLSHCGITHVTFTPPLEYVPLYVLSSMLYAQSERTKAKGKSQRTCETMKMEGQSSSSGFPLQLIPCSTGATGATDVSHIAEGVQNTHSFMYWRDKNHWNSPLQSSPTYVQYLSENTAYLPKSNTDEDMLGRNCPLPDSMDPTNGVNEMHRNLYYNEMGKAVKMEPGDSAIFVDAKKLGQSWKPDILYGQANKSRQVFDRKHVLCAPESGGLNHVISRVHQSIQIPATGSPSQPKQTLTRKVLPNDRERRIRLSEKLNALQELLPRASEGCQANVVDDIIDHVKYLLLQIKELSRSRLQSEPTATHLIYREGYGHFIDNQMFNEPLEEMIGKLLEDQEAAADFLERKGLFLLPMAYAEDIPRAL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00396 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 249 310 IPR036638 GO:0046983
Pte13g00396 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 289 IPR011598 GO:0046983
Pte13g00396 367 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 77 359 - -
Pte13g00396 367 CDD bHLH_AtbHLH_like 246 297 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00396 Pte-Chr13 2827710 2831128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00396 249 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 37.190 7.75e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00396 - - qsa:O6P43_010652 194.126