Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00372 ATGGAAGAGAAACTGAATTCTCCCGTTGGGGTTCTAGAGGACTATTTTAGAAGCTCAGACTCTGCTGCGAGTCCTTCCAAAGAACCTATTGAAAATCAAGAAAAATTGAAACCATCCCGATGGCGTGGGTTTGTACAATTGCTGAGATCTAAATCAAATAAAAACTCGGCTTTGTCACACCCTCTGAGTTCCCTTAAGCTCTCATGGAGGAGCAGTAGCATGAGGGAGACAACGACAAGAAGTTCAGAAATTCCACACAAAAAATCATTATGGAGGATCTTTGCCTTGCATGAGATACAAACTGCAACAAATAGCTTTAGCCAAGAAAATTTGATAGGAAAGGGTGGCTATGCTGAAGTATACAGGGGTTGTTTGAGAAATGGACAGCTTGTAGCGATCAAGAGACTTACAAGAGGAACACAGGATGAGATCATCGGGGATTTCCTGTCAGAGCTTGGCATCATGGCGCACGTAAACCATCCCAACGCTGCTAAACTGATTGGTTATGGAGTCGAAGGAGGAATGTACTTAGTACTTGAATTGTCTAAACAAGGAAGCTTAGCTTCTCTGCTGTATGGATCGAAGGAAAAATTGCCATGGAATATTAGGTACAAAGTTGCAATTGGCATAGCGGATGGATTATTGTACCTGCACGAGGGCTGTCATAGAAGAATTATTCACAGAGACATAAAGGCTGCAAATGTTTTGCTCACAGAGGATTTTCAGCCTCAGATTTGTGATTTTGGCCTAGCAAAATGGCTACCGGAGAAGTGGACTCATCTCACTCTGTCAAAATTTGAAGGGACATTTGGCTATCTTGCTCCTGAATTCTTGCTTCACGGCATTGTAAACGAGAAGACAGACGTGTTTGCGTTGGGTGTCTTGCTCTTGGAATTAGTCACAGGCAGACGAGCACTTGATTATTCACAGCAAAGTCTTGTTTTGTGGGCAAAACCATTGCTTAAGAAGAATGATTTCAAGGAGCTAATGGATCCTTCTCTAGCTAATGATGACTATGACACTCGGCAGATAAATCTTGTGCTTTTGGCTGCATCTCTGTGCATACATCAAACCTCAATTTGTCGGCCCTCAATAAGTCAGGTAGTACAGCTTCTAAACGGTAACCTCAGCCGGTTTAAGCGCATGAAGAAAAATCGAATTTCATTATTCCGAAGAGGTTTCCAGGACGAGCTCCTTGATTCTGATATCTGA 1212 0.4257 MEEKLNSPVGVLEDYFRSSDSAASPSKEPIENQEKLKPSRWRGFVQLLRSKSNKNSALSHPLSSLKLSWRSSSMRETTTRSSEIPHKKSLWRIFALHEIQTATNSFSQENLIGKGGYAEVYRGCLRNGQLVAIKRLTRGTQDEIIGDFLSELGIMAHVNHPNAAKLIGYGVEGGMYLVLELSKQGSLASLLYGSKEKLPWNIRYKVAIGIADGLLYLHEGCHRRIIHRDIKAANVLLTEDFQPQICDFGLAKWLPEKWTHLTLSKFEGTFGYLAPEFLLHGIVNEKTDVFALGVLLLELVTGRRALDYSQQSLVLWAKPLLKKNDFKELMDPSLANDDYDTRQINLVLLAASLCIHQTSICRPSISQVVQLLNGNLSRFKRMKKNRISLFRRGFQDELLDSDI* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00372 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Pte13g00372 403 ProSiteProfiles Protein kinase domain profile. 106 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00372 403 SMART serkin_6 106 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00372 403 PANTHER OS08G0249100 PROTEIN 20 386 IPR046958 -
Pte13g00372 403 MobiDBLite consensus disorder prediction 17 37 - -
Pte13g00372 403 SUPERFAMILY Protein kinase-like (PK-like) 81 372 IPR011009 -
Pte13g00372 403 Gene3D Phosphorylase Kinase; domain 1 66 180 - -
Pte13g00372 403 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 75 180 - -
Pte13g00372 403 Pfam Protein kinase domain 107 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00372 403 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 183 386 - -
Pte13g00372 403 ProSitePatterns Protein kinases ATP-binding region signature. 112 134 IPR017441 GO:0005524
Pte13g00372 403 Gene3D Transferase(Phosphotransferase) domain 1 183 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00372 Pte-Chr13 2685120 2688836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00372 69 374 Receptor kinase-like Gene Family AT1G53420 38.535 9.46e-66 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pte13g00372 Pkinase 1.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00372 - - gmx:100780587 579.711