Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00364 ATGGCGGAGGGGAAGAAAGAGAGAAAATCGGACGACGAGAGTGTGAAACTGTTTGTAGGTCAAGTGCCGAAGACCTTGACGGAAGATGAATTGCTTGCAATGTTCAAGGAGTTCGCTTTGGTCGACGAGGTCAAAATCATCAAGGATAAAACTACTCGTGCTTCCCGAGGGTGTTGCTTTGTAATATGTCCGTCTAGACAAGAGGCAGATAAAGCGGTCGATGCGTGTCATAATAAGAAAACTCTTCCCGGGGCATCTAGCCCGTTGCAAGTGAAGTATGCTGATGGCGAGTTGGAAAGGCTAGAGCACAAGCTTTTCATTGGAATGCTTCCTAAGAATGTTTCTGAGTCAGAAGTCCACTCTCTCTTCTCTAAATATGGAACTATAAAGGAGTTACAAATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGCTGCGCATTCTTGAAGTATGAAACTAAAGAACAAGCCCTTGCTGCTCTGGAAGCAATTAATGGGAAGCATAAAATGGAGGGTTCTAGTGTTCCTCTGGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGCCGAGCTCAAAGAGCACTAGCACAGGCATCTAATATGGCAAATGCTGATTTACAGCATCCATCGATGTTTGGATCTGTACCAATGGGTTACGGTTCCCCATATAATGGCTATGGCTATCAAACTCCTGGGGCTTATGGAATAATGCAATACCGCCTGCCACCCATGCAGAACCAACCTGGCTTCCACAATATGACCCCTCATATGAATCAAGGAAATTCAATACGTCCCGAACTTGCTCCCAGTATGCCCCATCGAGCATATGGTTTGCCCCCTGTCAATTTTGTTGGTTCTTATCCTGCAGTTCCAGGTCTGCCGCACGCAATGCCTTATCCTGGGGGCGTTATTAGTCCTAGACCTATGAGTGGCTCGCCTGGTTCCATGCTACCAAATATAAATAGCAAATATGCTACATCCTCAGGAACCAACAGAAGTTCTGGGGGTCAGGTTGAAGGATGTTGA 1029 0.4568 MAEGKKERKSDDESVKLFVGQVPKTLTEDELLAMFKEFALVDEVKIIKDKTTRASRGCCFVICPSRQEADKAVDACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSESEVHSLFSKYGTIKELQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQRALAQASNMANADLQHPSMFGSVPMGYGSPYNGYGYQTPGAYGIMQYRLPPMQNQPGFHNMTPHMNQGNSIRPELAPSMPHRAYGLPPVNFVGSYPAVPGLPHAMPYPGGVISPRPMSGSPGSMLPNINSKYATSSGTNRSSGGQVEGC* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00364 342 CDD RRM1_2_CELF1-6_like 104 179 - -
Pte13g00364 342 Gene3D - 2 98 IPR012677 -
Pte13g00364 342 MobiDBLite consensus disorder prediction 311 342 - -
Pte13g00364 342 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Pte13g00364 342 FunFam RNA-binding protein BRN1 2 99 - -
Pte13g00364 342 MobiDBLite consensus disorder prediction 313 342 - -
Pte13g00364 342 CDD RRM1_2_CELF1-6_like 16 92 - -
Pte13g00364 342 SMART rrm1_1 104 179 IPR000504 GO:0003723
Pte13g00364 342 SMART rrm1_1 16 92 IPR000504 GO:0003723
Pte13g00364 342 Gene3D - 99 192 IPR012677 -
Pte13g00364 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Pte13g00364 342 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Pte13g00364 342 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Pte13g00364 342 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Pte13g00364 342 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Pte13g00364 342 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Pte13g00364 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Pte13g00364 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Pte13g00364 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Pte13g00364 342 SUPERFAMILY RNA-binding domain, RBD 101 192 IPR035979 GO:0003676
Pte13g00364 342 PANTHER RNA BINDING PROTEIN 14 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00364 Pte-Chr13 2642031 2645339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00364 15 233 Eukaryotic Initiation Factors Gene Family AT1G71770 27.004 2.36e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00364 K13207 - mnt:21403340 528.48