Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00346 ATGTCAGGTGATGAAGGAAGTTTCTCCTCTGGGACTGGGGAAGAAGTGCATCAAGAGAAGAAGCAAAAGCAACTACAAGATCACTTCCATGGATCTATATCAGGACTCTCTGGTGCAAGCAATAGTAATGGCTCCTCTATTAATCCGCAGCAGCCGGCCAAGAAGAAAAGAAACCTTCCTGGAACACCAGGCAAATTCAACTGCCCCATCAACCTCAAACATTGGTTTATGGGTATCATTGTTGTGGTGGAACATCCAAACGCCGAAGTTGTGGCTTTATCGCCGAACACGCTGATGGCAACGAATAGGTTTGTGTGTGAGATATGTAATAAAGGGTTTCAGAGGGATCAAAACCTTCAGTTGCATCGTAGAGGTCATAATCTCCCATGGAAACTCCGACAAAGAACCACAACTGAGGTCAAGAAACGGGTTTACATATGCCCTGAGCCATCATGCGTTCACCATAATCCAGCTCGTGCATTAGGAGATCTGACAGGCATTAAGAAACACTATAGTAGGAAACATGGTGAGAAGAAATGGAAATGTGATAAGTGCTCCAAGAAATATGCAGTTCAGTCTGATTGGAAGGCACATCAAAAGACTTGTGGGACTAGAGAATATAAATGCGATTGCGGAACCATCTTTTCCCGGAGAGACAGTTTTATCACTCACAGAGCTTTTTGTGATGCATTGGCGGAAGAAAACAACAAAATGAATCAGGGACTAGCAAACAACTTGTCGTCAAACATACAAAACGGACTGGCAGATCTGATGCCTTCTGTGCATCTGAACAACAATGCAACCCCAGTGCCTGACTACAACAACTTTGATCCAAAAAATCCACTCAAATCTCTAACCCCAGAACTTGTCCCAATCCCGTTCAAACCCACCAACATAAGCGGATCCATGTTCTCGTGTCCCTCAGCTACATTATTTGGCGGTCCTCGAAGTATGTCCTCCTCCAACTCATCTAGCCTCCAGCTCACAAATATCCCATCTAGCTTCAATTATCTCCATGATGGCAAAAATGGAGGCCTGATTTCAGGATCTACTCAGATGTCCGCCACCGCCTTGTTGCAGAAAGCAGCTCAAATGGGTGCCACAACAAGTAATAACATGAACTCTCCAATGATGCAGAAGAGCTATGTTACTACTAGCATGGCTGGTCGAGATCACGTATCTTCTGTTAAACCAACATTAATTCCAGGCAATGGCAACCAGCAACATGACTCCTCGTCATATGACCACTTCCAACCACAGTCTGATCACTCCAATGTAATTGGAATGAGTGGTGGAGCATTCTCACAGCTATATGATGCTAATGTAACAGGCTCCTCAATCAACACAATGCAAATGTTCAATGAAATGTTCATGGAAAATGACCAAAACCACCAAGCTTTCATGAAAAACATCGAACAAGATAATTTGATCCATGAAAGAAGTGCAACTGAAAGAAACCTACTAGGGCCATCAAAGTTCAAAGGAAGCACTGACATGACGACTGTTGACTTCTTAGGAGTAGGAGGGCCTAGGTCTGCAAATATGCATGAACAGCAGCAGCAGCTGGAGGCAATGGCTCAACAGAGGCTACCCGTCATGAATCCTTTTCATCACCAACTTTCGCATTCGCATGGGACATATGATAATTGA 1650 0.4406 MSGDEGSFSSGTGEEVHQEKKQKQLQDHFHGSISGLSGASNSNGSSINPQQPAKKKRNLPGTPGKFNCPINLKHWFMGIIVVVEHPNAEVVALSPNTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVKKRVYICPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKMNQGLANNLSSNIQNGLADLMPSVHLNNNATPVPDYNNFDPKNPLKSLTPELVPIPFKPTNISGSMFSCPSATLFGGPRSMSSSNSSSLQLTNIPSSFNYLHDGKNGGLISGSTQMSATALLQKAAQMGATTSNNMNSPMMQKSYVTTSMAGRDHVSSVKPTLIPGNGNQQHDSSSYDHFQPQSDHSNVIGMSGGAFSQLYDANVTGSSINTMQMFNEMFMENDQNHQAFMKNIEQDNLIHERSATERNLLGPSKFKGSTDMTTVDFLGVGGPRSANMHEQQQQLEAMAQQRLPVMNPFHHQLSHSHGTYDN* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00346 549 Pfam Zinc finger, C2H2 type 104 126 IPR013087 -
Pte13g00346 549 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 528 IPR031140 -
Pte13g00346 549 Gene3D Classic Zinc Finger 86 149 - -
Pte13g00346 549 FunFam protein indeterminate-domain 12-like 83 151 - -
Pte13g00346 549 SUPERFAMILY beta-beta-alpha zinc fingers 103 201 IPR036236 -
Pte13g00346 549 SMART c2h2final6 104 126 IPR013087 -
Pte13g00346 549 SMART c2h2final6 180 200 IPR013087 -
Pte13g00346 549 SMART c2h2final6 145 175 IPR013087 -
Pte13g00346 549 FunFam protein indeterminate-domain 5, chloroplastic-like 158 237 - -
Pte13g00346 549 MobiDBLite consensus disorder prediction 402 426 - -
Pte13g00346 549 MobiDBLite consensus disorder prediction 28 55 - -
Pte13g00346 549 Gene3D Classic Zinc Finger 159 238 - -
Pte13g00346 549 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Pte13g00346 549 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 126 IPR013087 -
Pte13g00346 549 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00346 Pte-Chr13 2468669 2471277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00346 34 370 IDZ Gene Family AT3G50700 50.811 3.09e-106 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte13g00346 zf-C2H2 0.0056 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00346 - - qsa:O6P43_010738 701.049