Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00345 ATGGGAGAGGCAAGTGGTGCTTCTGCTGATGAGGGTACTGTCATAAAAGACCAGGATCGGCTGCTTCCAATTGCTAACGTTGGGAGGATTATGAAGCAGATTCTACCACCTCATGCTAAAGTCTCTAAAGAAGCTAAGGAAAATATGCAAGAGTGTGTTTCTGAGTTCATCAGCTTTGTTACCGGTGAAGCATCCGACAAGTGTTACAAGGAGAAGCGCAAGACAGTGAATGGAGATGATATTTGCTGGGCCTTAGCAACTCTAGGGTTTGATGACTATGCTGAACCACTGAAAAGGTACCTCCAAAAGTACAGAGATTCAGAAGGTGAGAAAGCTAACCAGAACAAGGCTAACGACTGTGATGAGGTCAAAGACGACGAAAGACACCACTATGTTCATAAGCCAACAAGGAAGCCCACAGTATCCTCTGGAATTCCATTGAAGTTCATAGGTGCTGCCTCTTGTTCCAGGCCATTTTAA 480 0.4479 MGEASGASADEGTVIKDQDRLLPIANVGRIMKQILPPHAKVSKEAKENMQECVSEFISFVTGEASDKCYKEKRKTVNGDDICWALATLGFDDYAEPLKRYLQKYRDSEGEKANQNKANDCDEVKDDERHHYVHKPTRKPTVSSGIPLKFIGAASCSRPF* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00345 159 SUPERFAMILY Histone-fold 18 128 IPR009072 GO:0046982
Pte13g00345 159 ProSitePatterns NF-YB/HAP3 subunit signature. 52 68 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pte13g00345 159 Gene3D Histone, subunit A 11 139 IPR009072 GO:0046982
Pte13g00345 159 FunFam Nuclear transcription factor Y subunit B-3 10 134 - -
Pte13g00345 159 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 125 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pte13g00345 159 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 21 85 IPR003958 -
Pte13g00345 159 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Pte13g00345 159 PRINTS CCAAT-binding transcription factor subunit A signature 49 67 - -
Pte13g00345 159 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00345 Pte-Chr13 2462640 2463119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00345 10 115 CCAAT-HAP3 Transcription Factor Family AT2G47810 78.302 1.43e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pte13g00345 CBFD_NFYB_HMF 7.8e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00345 K08065 - qsa:O6P43_007138 218.394