Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00312 ATGGACGAAGCCAATGCGGGCACTGAAATATCTCCGAACATGACCATCTACATCAACAACCTCAACGAAAAAATCAAACTTGACGAATTGAAGAAGTCGTTGCACGCGGTGTTCTCTCAGTTTGGGAAGATACTGGAGGTGTTGGCGTTTAAGACATTGAAGCACAAAGGTCAAGCTTGGGTTGTTTTTGAGGATGTCAATTCAGCCGTCAATGCGCTTAGACAGATGCAAGGCTTCCCTTTCTACGATAAGCCGATGAAAATTCAATATGCCAAGACAAAATCTGATATTATAGCTAAAGCTGATGGCACTTTTGTTCCCCGTGAAAAACGTAAAAGACATGATGAAAAAGGTAAAAATAAACGGAAGGATCAACATGATGCTAATCAAGCTGCAACAGGGATGAATCCTGCTTATGCTGGTGCTTATGGTGCTCCTCCTCTGTCACAGATACCTTATCCAGGTGGTGCAAAAGCTGCAGTCCCAGAGGCTCCAGCACCACCAAATAATATTCTCTTTATTGAAAATCTTCCTACCGAAACAACTCCTGTGATGCTACAAATGCTCTTCCATCAATATCCTGGTTTTAAGGAGGTTAGGATGGTGGAAACAAAGCCTGGAATTGCTTTCGTGGAGTATGGAGATGAGATGCAATCGACTGTGGCAATGCAGGCACTACAGGGTTTCAAGCTAACTGCACAGAATGCGATGCTGATCACATATGCAAAGAAATAG 735 0.4313 MDEANAGTEISPNMTIYINNLNEKIKLDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVNSAVNALRQMQGFPFYDKPMKIQYAKTKSDIIAKADGTFVPREKRKRHDEKGKNKRKDQHDANQAATGMNPAYAGAYGAPPLSQIPYPGGAKAAVPEAPAPPNNILFIENLPTETTPVMLQMLFHQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKLTAQNAMLITYAKK* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00312 244 SUPERFAMILY RNA-binding domain, RBD 12 232 IPR035979 GO:0003676
Pte13g00312 244 FunFam U2 small nuclear ribonucleoprotein B'' 161 244 - -
Pte13g00312 244 CDD RRM1_U1A_like 15 92 - -
Pte13g00312 244 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 12 93 - -
Pte13g00312 244 CDD RRM2_U1A_like 169 240 - -
Pte13g00312 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Pte13g00312 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 232 IPR000504 GO:0003723
Pte13g00312 244 Gene3D - 8 102 IPR012677 -
Pte13g00312 244 FunFam U1 small nuclear ribonucleoprotein A 8 113 - -
Pte13g00312 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 93 IPR000504 GO:0003723
Pte13g00312 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 244 IPR000504 GO:0003723
Pte13g00312 244 MobiDBLite consensus disorder prediction 103 130 - -
Pte13g00312 244 Gene3D - 158 244 IPR012677 -
Pte13g00312 244 SMART rrm1_1 15 89 IPR000504 GO:0003723
Pte13g00312 244 SMART rrm1_1 171 240 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00312 Pte-Chr13 2233766 2236426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00312 16 96 Eukaryotic Initiation Factors Gene Family AT4G34110 32.530 7.93e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00312 K11091 - zju:107405965 405.216