Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte13g00312 | ATGGACGAAGCCAATGCGGGCACTGAAATATCTCCGAACATGACCATCTACATCAACAACCTCAACGAAAAAATCAAACTTGACGAATTGAAGAAGTCGTTGCACGCGGTGTTCTCTCAGTTTGGGAAGATACTGGAGGTGTTGGCGTTTAAGACATTGAAGCACAAAGGTCAAGCTTGGGTTGTTTTTGAGGATGTCAATTCAGCCGTCAATGCGCTTAGACAGATGCAAGGCTTCCCTTTCTACGATAAGCCGATGAAAATTCAATATGCCAAGACAAAATCTGATATTATAGCTAAAGCTGATGGCACTTTTGTTCCCCGTGAAAAACGTAAAAGACATGATGAAAAAGGTAAAAATAAACGGAAGGATCAACATGATGCTAATCAAGCTGCAACAGGGATGAATCCTGCTTATGCTGGTGCTTATGGTGCTCCTCCTCTGTCACAGATACCTTATCCAGGTGGTGCAAAAGCTGCAGTCCCAGAGGCTCCAGCACCACCAAATAATATTCTCTTTATTGAAAATCTTCCTACCGAAACAACTCCTGTGATGCTACAAATGCTCTTCCATCAATATCCTGGTTTTAAGGAGGTTAGGATGGTGGAAACAAAGCCTGGAATTGCTTTCGTGGAGTATGGAGATGAGATGCAATCGACTGTGGCAATGCAGGCACTACAGGGTTTCAAGCTAACTGCACAGAATGCGATGCTGATCACATATGCAAAGAAATAG | 735 | 0.4313 | MDEANAGTEISPNMTIYINNLNEKIKLDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVNSAVNALRQMQGFPFYDKPMKIQYAKTKSDIIAKADGTFVPREKRKRHDEKGKNKRKDQHDANQAATGMNPAYAGAYGAPPLSQIPYPGGAKAAVPEAPAPPNNILFIENLPTETTPVMLQMLFHQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKLTAQNAMLITYAKK* | 245 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte13g00312 | 244 | SUPERFAMILY | RNA-binding domain, RBD | 12 | 232 | IPR035979 | GO:0003676 | |
Pte13g00312 | 244 | FunFam | U2 small nuclear ribonucleoprotein B'' | 161 | 244 | - | - | |
Pte13g00312 | 244 | CDD | RRM1_U1A_like | 15 | 92 | - | - | |
Pte13g00312 | 244 | PANTHER | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B | 12 | 93 | - | - | |
Pte13g00312 | 244 | CDD | RRM2_U1A_like | 169 | 240 | - | - | |
Pte13g00312 | 244 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 16 | 86 | IPR000504 | GO:0003723 | |
Pte13g00312 | 244 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 172 | 232 | IPR000504 | GO:0003723 | |
Pte13g00312 | 244 | Gene3D | - | 8 | 102 | IPR012677 | - | |
Pte13g00312 | 244 | FunFam | U1 small nuclear ribonucleoprotein A | 8 | 113 | - | - | |
Pte13g00312 | 244 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 14 | 93 | IPR000504 | GO:0003723 | |
Pte13g00312 | 244 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 170 | 244 | IPR000504 | GO:0003723 | |
Pte13g00312 | 244 | MobiDBLite | consensus disorder prediction | 103 | 130 | - | - | |
Pte13g00312 | 244 | Gene3D | - | 158 | 244 | IPR012677 | - | |
Pte13g00312 | 244 | SMART | rrm1_1 | 15 | 89 | IPR000504 | GO:0003723 | |
Pte13g00312 | 244 | SMART | rrm1_1 | 171 | 240 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte13g00312 | Pte-Chr13 | 2233766 | 2236426 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte13g00312 | 16 | 96 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 32.530 | 7.93e-06 | 44.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte13g00312 | K11091 | - | zju:107405965 | 405.216 |